CB250370

Overview
NameCB250370
Unique NameCB250370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:294..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.079e-38
Identity = 68/117 (58.12%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE--NDPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN G SCG CY + C+    P+WC  G+ + +TATN CPPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G +YF LVLITNV G+G
Sbjct:   67 TALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSG 183          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.207e-37
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDP--KWCLP-GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN+G +CG CY + C+ D   +WC P G++ VTATN CPPN AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F LVL+ NV G+G
Sbjct:   67 TALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSG 183          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.577e-37
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            T LF +G  CG CYE++C   P WC PGS  +++T TN CPPN  L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ + NVGGAGD
Sbjct:   94 TPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGD 209          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.022e-36
Identity = 68/116 (58.62%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    4 ALFNNGLSCGSCYEMKCEND--PKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            ALFN+G SCG CY + C+    P+WC  G+ + VTATN CPPN AL +D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++R+ C ++GG+RFTV G +YF LVLITNV G+G
Sbjct:   69 ALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSG 184          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.130e-35
Identity = 63/117 (53.85%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            + LFN+G SCG CY + C+    P+WC  G+ + +TATN CPPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G ++F LVL++NV G+G
Sbjct:   67 SVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSG 183          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            T LFN+G  CG C+++ C   P      S +VTATN CPPN    ++ GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+ L+ + NVGGAGD
Sbjct:   77 TTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGD 191          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.928e-35
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALFN G +CG C+++KC + P  C  GS   +VTATN CPPN   +++NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+ LV + NVGG GD
Sbjct:   71 TALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGD 186          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.567e-35
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALF  G +CG CYE+KC +D K+CLPG SI+VTATNFC PN  L  D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G S+F  VLI+NVGGAGD
Sbjct:   72 TALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGD 187          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.249e-34
Identity = 63/116 (54.31%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            +AL+ +G SCG+CY + C+ +  +WC  G S+ VTATN+CPPN + S D GGWCNPP +HFDM++PA+  IA Y +GIVP+ + R PC + GGIRF + GH Y+ LVL+TNV G+G
Sbjct:   67 SALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSG 182          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.635e-34
Identity = 64/116 (55.17%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    4 ALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            ALF  G +CG CYE++C N   WCL GS  ++VTAT+FC PNL LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G + F  VLITNV   G+
Sbjct:   75 ALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGE 190          
The following BLAST results are available for this feature:
BLAST of CB250370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP28_ORYSJ7.079e-3858.12Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.207e-3757.26Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ1.577e-3756.41Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ1.022e-3658.62Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.130e-3553.85Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH1.928e-3552.17Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ARATH1.928e-3554.70Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP10_ORYSJ9.567e-3557.76Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ1.249e-3454.31Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ORYSJ3.635e-3455.17Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionEST0168 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ243 similar to expansin (acc# AAC33530), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250370 ID=CB250370; Name=CB250370; organism=Citrus sinensis; type=EST; length=346bp
ACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAA
ATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCG
CCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGT
TGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTT
GCAAATTGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGA
TCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCA
TACTTCAACCTGGTTTTGATCACAAATGTCGGAGGAGCAGGAGATG
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