CB250383

Overview
NameCB250383
Unique NameCB250383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9615 contig Csv1_Contig9615:181..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.786e-20
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTK 239
            L EV+  N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+  S +  K
Sbjct:   25 LEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPK 103          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.499e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    6 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 224
            AEV+ HN  KD WL+I   +YDVT FL++HPGG+EVL+   GKDAT++FEDVGHS+ A+ MM ++ +G++  S
Sbjct:   12 AEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVES 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.556e-19
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTK 239
            L EV+  N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+  + +  K
Sbjct:   25 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPK 103          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.438e-19
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 227
            L EVS H  + D W++I  KVYD+T+F+ +HPGG+EVL+   GKDAT+ FED+GHS  A+ M++E+ +G +D ++
Sbjct:    8 LDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.164e-18
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 3
Query:    6 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI---DSSTVPTKTK 245
            AEV+ +N +   W II   VYDVT FL++HPGG+EVL+   GKDAT+ FEDVGHSS A+ MM ++ VG++   + S VP K++
Sbjct:   12 AEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEERSNVPEKSE 94          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 2.164e-18
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTKTK 245
            L EV  HN+ +  W+I+  ++YD+TKFLD+HPGG+EVL    G DAT++FEDVGHS+ A+A+ + F +G++     P   K
Sbjct:   19 LEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGELHPDDRPKLQK 99          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.297e-18
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTKTK 245
            L E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ M   F +G++     P   K
Sbjct:   14 LEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNK 94          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.074e-17
Identity = 38/80 (47.50%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI----DSSTVPT 236
            EV  HN R D +++++ KVYD++KFLD HPGG+EVL+   G+DA+  FEDVGHS  A+ ++++FY+G++    D   +PT
Sbjct:   10 EVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNLLRTEDGPQLPT 89          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.403e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            L E+  HN  K  WLI+  KVYD+TKFL+DHPGG+EVL    G DAT++FED+GHS+ A+ +   F +G++
Sbjct:   14 LEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGEL 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.403e-17
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVP 233
            L E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT+DFEDVGHS+ A+ +   + +G++     P
Sbjct:   10 LEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGELHPDDRP 86          
The following BLAST results are available for this feature:
BLAST of CB250383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYB5B_MOUSE8.786e-2049.37Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5_DROME1.499e-1954.79Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5B_RAT2.556e-1948.10Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_RHIST7.438e-1949.33Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_MUSDO2.164e-1851.81Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_CHICK2.164e-1846.91Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
CYB5_HUMAN6.297e-1849.38Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB52_SCHPO1.074e-1747.50Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_HORSE1.403e-1752.11Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_ALOSE1.403e-1749.35Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0185 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ268 similar to cytochrome b5 (acc# P49098), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250383 ID=CB250383; Name=CB250383; organism=Citrus sinensis; type=EST; length=245bp
CTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCTTATC
ATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATCCTGG
TGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGACGACT
TTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGAATTC
TATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAG
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