CB250383

Overview
NameCB250383
Unique NameCB250383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9615 contig Csv1_Contig9615:181..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.832e-17
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            L E+  HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   14 LEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.393e-17
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            L E+  HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   14 LEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 3.125e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            L E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   14 LEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.081e-17
Identity = 34/73 (46.58%), Postives = 54/73 (73.97%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 227
            EV+ HN  ++ W+II+ KVYDV++F D+HPGGDE+++   G+DAT+ F D+GHS  A  ++   Y+GD+D ++
Sbjct:    9 EVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS 81          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.330e-17
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 224
            + EV+ HN  + CW +  GKVYD T +LD+HPGG E +L   G DATD+F  + HSS AKAM+ ++Y+GD+ +S
Sbjct:  502 MEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVAS 574          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.330e-17
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTKTK 245
            +V+ HN +KD +++I  KVYD+TKF+D+HPGG+EVLL   G+D+T+ FEDVGHS  A+  ++   VG +       K K
Sbjct:    9 DVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTLKRQAGDPKPK 87          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.962e-17
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 227
            E+  HN+ KD +++I GKVYDV+ F DDHPGG +++L   G+DAT  ++D+GHS +A  +++E Y+GD+   T
Sbjct:   10 EIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGT 82          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.188e-16
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            L E+  H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   14 LEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.188e-16
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            L E+  H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   14 LEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.188e-16
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI--DSSTVP 233
            LA++S H  +   +L I GKVYD T F+D+HPGG+EVL+   G+DAT+ FEDVGHS  A+ +M +  VG+   DSS  P
Sbjct:    9 LADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKP 87          
The following BLAST results are available for this feature:
BLAST of CB250383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYB5_PIG1.832e-1752.11Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_BOVIN2.393e-1752.11Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT3.125e-1752.11Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_YEAST4.081e-1746.58Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
NIA_VOLCA5.330e-1750.00Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_NEUCR5.330e-1746.84Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB51_SCHPO6.962e-1746.58Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_RAT1.188e-1649.30Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_MOUSE1.188e-1649.30Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB5_MORAP1.188e-1650.63Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0185 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ268 similar to cytochrome b5 (acc# P49098), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250383 ID=CB250383; Name=CB250383; organism=Citrus sinensis; type=EST; length=245bp
CTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCTTATC
ATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATCCTGG
TGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGACGACT
TTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGAATTC
TATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAG
back to top