CB250383

Overview
NameCB250383
Unique NameCB250383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9615 contig Csv1_Contig9615:181..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  HN  +  W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  544 MSEVRKHNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H  ++  W+++ G VYD TKFL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  254 MSEVRKHASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 323          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.774e-12
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 224
            ++EV  HN     W+++ G VY+ T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++ S+
Sbjct:  556 MSEVKKHNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKRLLEDFRIGELIST 628          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_PHYIN (Nitrate reductase [NADPH] OS=Phytophthora infestans GN=NIAA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.774e-12
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTKT 242
            EV+ HN +K CW I    VYD T FLD+HPGG   +L   G D TD+FE + HS+ A  M+ ++ +G   S+   T T
Sbjct:  544 EVAKHNSKKSCWFICRDLVYDATPFLDEHPGGATSILLCGGTDCTDEFESI-HSTKAWQMLKKYCIGRCSSTEDDTGT 620          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.774e-12
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  HN     W+++ G +YD T FL DHPGG + +L   G D T++F+ + HS  AK +++E+ VG++
Sbjct:  539 MSEVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAI-HSDKAKKLLEEYRVGEL 608          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.774e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H+     W+I+ G +YD T+FL DHPGG + +L   G D T++F+ + HS  AK +++EF +G++
Sbjct:  536 MSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKLLEEFRIGEL 605          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  HN  +  W+I+ G +YD T FL DHPGG + +L   G D T++F+ + HS  AK M++++ +G++
Sbjct:  533 MSEVKKHNSAESAWIIVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 602          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H  ++  W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  540 MSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 609          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H  ++  W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  543 MSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 612          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  HN     W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  550 ISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 619          
The following BLAST results are available for this feature:
BLAST of CB250383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
NIA2_BRANA1.359e-1239.44Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA1_MAIZE1.359e-1240.85Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NIA_SPIOL1.774e-1237.84Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA_PHYIN1.774e-1243.59Nitrate reductase [NADPH] OS=Phytophthora infestan... [more]
NIA_CICIN1.774e-1239.44Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA1_TOBAC1.774e-1239.44Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA_BETVE2.318e-1239.44Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA2_HORVU2.318e-1239.44Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA1_HORVU2.318e-1239.44Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]
NIA1_ARATH2.318e-1239.44Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionEST0185 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ268 similar to cytochrome b5 (acc# P49098), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250383 ID=CB250383; Name=CB250383; organism=Citrus sinensis; type=EST; length=245bp
CTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCTTATC
ATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATCCTGG
TGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGACGACT
TTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGAATTC
TATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAG
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