CB250383

Overview
NameCB250383
Unique NameCB250383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9615 contig Csv1_Contig9615:181..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.562e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    6 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAK--AMMDEFYVGDIDSSTVP 233
            +E++ HN   DCW+ ++GKVYD+T+++  HPGG EVLL A G+D T+ FE   H  S K  +++  + +G I S   P
Sbjct:   19 SELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESY-HPMSDKPTSILKNYEIGYISSYEHP 95          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_BEABA (Nitrate reductase [NADPH] OS=Beauveria bassiana GN=NIA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 27/74 (36.49%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 224
            L E+  H    + W ++ G VY+ T +LD+HPGG   +++A  +DAT++F  + HS +AKAMM ++++G ++ +
Sbjct:  540 LEELKAHEGEMEPWFVVNGHVYNGTPYLDNHPGGATSIINAAAQDATEEFMTI-HSENAKAMMPQYHIGTLNDA 612          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NB5R4_DANRE (Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    9 EVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVG 209
            E+  HN +KDCW  I G VY+++ ++D HPGG+E L+ A G D+TD F++V    + ++M+ E  VG
Sbjct:   63 ELKKHNTKKDCWTCIRGMVYNLSAYMDFHPGGEEELMRAAGIDSTDLFDEVHRWVNYESMLKECLVG 129          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_LEPMC (Nitrate reductase [NADPH] OS=Leptosphaeria maculans GN=NIAD PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVPTKTK 245
            L E+  H   +  W ++  +VYD T FL+ HPGG + ++SA G DA+D+F  + HS +AKAMM  +++G +     PT +K
Sbjct:  541 LDELKWHESAEYPWFVVNDEVYDGTSFLEGHPGGAQSIISAAGLDASDEFMAI-HSETAKAMMPAYHIGTLS----PTASK 616          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_USTMA (Nitrate reductase [NADPH] OS=Ustilago maydis GN=NAR1 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    6 AEVSGHNDRK--DCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDID 218
            A+++ H D +  + W ++ G VYD T FL DHPGGD+ +    G+DAT+DF  + HS  AK M+ +F++G ++
Sbjct:  591 ADLAAHGDGEGPEPWFVVHGHVYDGTGFLKDHPGGDQSIRLVAGEDATEDFMAI-HSMDAKKMLRDFHLGRLE 662          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA_NEUCR (Nitrate reductase [NADPH] OS=Neurospora crassa GN=nit-3 PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 224
            L E+  H+  ++ W ++ G+VY+ T FL+ HPGG   +  A G+D TD+F  + HS +AKAMM  +++G +  S
Sbjct:  622 LEELRQHDGEEEPWFVVNGQVYNGTPFLEGHPGGAASITGAAGQDVTDEFLAI-HSENAKAMMPTYHIGTLTPS 694          
BLAST of CB250383 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 26/71 (36.62%), Postives = 46/71 (64.79%), Query Frame = 3
Query:    3 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 215
            ++EV  H  +   W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS+ A+ +++ + VG++
Sbjct:  520 MSEVRRHASKDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSAKARGLLEMYRVGEL 589          
The following BLAST results are available for this feature:
BLAST of CB250383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
FAD5A_DICDI2.562e-1142.31Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
NIA_BEABA3.347e-1136.49Nitrate reductase [NADPH] OS=Beauveria bassiana GN... [more]
NB5R4_DANRE3.347e-1143.28Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4... [more]
NIA_LEPMC7.455e-1139.51Nitrate reductase [NADPH] OS=Leptosphaeria maculan... [more]
NIA_USTMA9.737e-1141.10Nitrate reductase [NADPH] OS=Ustilago maydis GN=NA... [more]
NIA_NEUCR9.737e-1139.19Nitrate reductase [NADPH] OS=Neurospora crassa GN=... [more]
NIA7_HORVU9.737e-1136.62Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0185 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ268 similar to cytochrome b5 (acc# P49098), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250383 ID=CB250383; Name=CB250383; organism=Citrus sinensis; type=EST; length=245bp
CTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCTTATC
ATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATCCTGG
TGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGACGACT
TTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGAATTC
TATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAG
back to top