CB290204

Overview
NameCB290204
Unique NameCB290204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13457 contig Csv1_Contig13457:927..1723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290204 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 57/205 (27.80%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  131 RLPPGPTPYPVIGNLLELGNK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRA---GTAI--HIGQAAFDTTLNLISNTIFSIDLADPTSKTAREFKQTNWGMMEEAGKPNLSDFFPVL 718
            +LPPGP P P+ GN L++G+   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   +H    +   ++  V++N  A   GT I   +    ++    ++ +  F  +  DP  +  R         + ++ + N  DF P+L
Sbjct:   32 KLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESEAAAVVEDVKKNPDAAVSGTVIRRRLQLMMYNNMYRIMFDRRFESE-EDPIFQRLRALNGER-SRLAQSFEYNYGDFIPIL 231          
BLAST of CB290204 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 51/163 (31.29%), Postives = 83/163 (50.92%), Query Frame = 2
Query:   65 LFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGNK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 541
            LF+ I+V ++    RG K    +LPPGP P PV GN L++G+   H++L+  AK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   ++   ++   ++  V++N  + T
Sbjct:   13 LFAAIIVASIVSKLRGKKF---KLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESAT 169          
BLAST of CB290204 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  131 RLPPGPTPYPVIGNLLELGNK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQH 478
            +LPPGP P P+ GN L++G+   H++L +LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   +H
Sbjct:   32 KLPPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRH 148          
BLAST of CB290204 vs. ExPASy Swiss-Prot
Match: C71BF_ARATH (Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=CYP71B15 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 43/180 (23.89%), Postives = 86/180 (47.78%), Query Frame = 2
Query:   77 ILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGNKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDL 616
            +L+  +  F    K    +LPPGP   P+IGNL +      ++   LA+++GP+  L++G V  V  SS   A+E+L+  D   C+R     + A  ++   +   P    W  +RK+     FS ++L + +++  ++    +  + E     + +++ +A F    N++    + I+L
Sbjct:    9 VLLPLILIFLNVLKPSKYKLPPGPKKLPIIGNLHQRRTLHPRNRRNLAEMYGPVALLQYGFVPVVAISSKEAAEEVLKINDLECCSRPEAAGMRATFYNFKDIGMAPFGDEWSLMRKLSVVELFSVKKLQSFKYIIEEENNLCVKKLSEFATRQSPVNLERAIFTLVGNIVCRIGYGINL 188          
BLAST of CB290204 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 51/173 (29.48%), Postives = 84/173 (48.55%), Query Frame = 2
Query:   35 MDTVSCVPWLLFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGNK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 541
            MD +     LL  +  ++A  + S+  +    +LPPGP P P+ GN L++G+   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   +     +   ++  V++N +A T
Sbjct:    1 MDLLLVEKTLLALFAAIIASIFISK-LRGKRFKLPPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAAT 169          
BLAST of CB290204 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 52/163 (31.90%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   65 LFSWILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGNK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 541
            LF+ I+   L    RG K    +LPPGP P P+ GN L++G+   H++L  LAK  G I+ L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++ +   ++    +   ++  V++N  A T
Sbjct:   13 LFAAIIGAILISKLRGKKF---KLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDVKKNPAAAT 169          
The following BLAST results are available for this feature:
BLAST of CB290204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
TCMO_SOYBN2.755e-1127.80Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_CATRO2.755e-1131.29Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_PHAAU3.598e-1135.00Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
C71BF_ARATH3.598e-1123.89Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=C... [more]
TCMO_ZINEL6.138e-1129.48Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_HELTU6.138e-1131.90Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290204 ID=CB290204; Name=CB290204; organism=Citrus sinensis; type=EST; length=797bp
GCCCGTTGTTCAACAAAAGAGAGCGAGATTAAAGATGGATACGGTAAGCT
GCGTACCATGGCTTCTATTCTCGTGGATTTTGGTCGTCGCTTTAAATTAC
TTTTCAAGAGGATTCAAATCTGGATCCAGAAGGCTTCCACCGGGACCGAC
GCCTTATCCGGTGATCGGAAACCTCCTGGAACTCGGCAACAAACCTCACA
AGTCACTTGCTAAACTTGCCAAGATTCATGGCCCCATAATGAGTCTAAAA
TTTGGCCAGGTGACCACAGTTGTCTTTTCTTCTGCAGCCATGGCCAAAGA
AATCCTTCAAAATCAAGACACATCTTTCTGTAATCGAACAATCCCAGACG
CAATCTACGCCCACGGCCATCATGAATTCGGGATGCCCTGGCTGCCTGTG
GCGACACTGTGGAGAAATCTTCGAAAAATATGCAACTCACATGCTTTCTC
TAGTCGCCAACTCGATGCCAATCAGCACCTTCGGCGTAAGAAAATCCAAG
ATCTTCTAGCTTATGTCCAAGAAAATTGCCGTGCAGGTACAGCAATACAT
ATTGGCCAAGCTGCTTTCGACACTACGCTTAATTTGATATCCAACACAAT
TTTTTCTATTGACTTGGCTGATCCCACATCAAAAACTGCGCGAGAGTTTA
AGCAAACAAATTGGGGTATGATGGAAGAAGCTGGAAAGCCTAACTTGTCC
GATTTTTTTCCTGTGCTTGAGAATCTTGACTTGNCAGGTATAAGGCGTCG
CATGACAGTTTATTTTGGCAAGATGCTCGATGTATTTGATCGCTTGA
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