CB290207

Overview
NameCB290207
Unique NameCB290207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:772..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: TINAL_HUMAN (Tubulointerstitial nephritis antigen-like OS=Homo sapiens GN=TINAGL1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = -2
Query:  301 TPKCVRKCVKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDV--------MGGHAVKLIGWG--TSDDGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 669
            T  C    V  N +++ +       YR+ S+ ++IM E+ +NGPV+    V+EDF  YK G+Y H P  +         G H+VK+ GWG  T  DG    YW  AN W  +WG  G+F+I RG NEC IE  V+
Sbjct:  324 TAHCPNSYVNNNDIYQVTP-----VYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVL 453          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.987e-19
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  301 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKH--------IPGDVMGGHAVKLIGWGTSDDGED---YWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 594
            Y+++S  EDI  E+  NGPV+ +F V+EDF  Y  GVY+H              G H+V+++GWG          YW+ AN W   WG DGYFK+ RG N C IE  V+
Sbjct:  318 YKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEIESFVI 426          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: TINAL_RAT (Tubulointerstitial nephritis antigen-like OS=Rattus norvegicus GN=Tinagl1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = -2
Query:  301 EPAYPTPKCV----------RKCVKK---NQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDV--------MGGHAVKLIGWG--TSDDGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 684
            + A PTP+C+          R+   +   +Q+  N  +     YR+ SD ++IM E+ +NGPV+    V+EDF  Y+ G+Y H P            G H+VK+ GWG  T  DG    YW  AN W   WG  G+F+I RG NEC IE  V+
Sbjct:  301 DEASPTPRCMMHSRAMGRGKRQATSRCPNSQVDSNDIYQVTPVYRLASDEKEIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERGHFRIVRGINECDIETFVL 453          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATC_BOVIN (Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  280 EIYKNGPVEVSFTVYEDFAHYKFGVYKHI-------PGDVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 558
            E+   GP+ V+F VY+DF HY+ GVY H        P ++   HAV L+G+GT +  G DYWI+ N W  SWG +GYF+I+RG++EC IE   +A  P  K
Sbjct:  363 ELVHQGPMAVAFEVYDDFLHYRKGVYHHTGLRDPFNPFELTN-HAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYFRIRRGTDECAIESIALAATPIPK 462          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = -2
Query:  280 PAYPTPKCVRKCVKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHI-------PGDVMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 681
            P  P   C+R        + +S++  +  +    +   +  E+ K+GP+ V+F V++DF HY  G+Y H        P ++   HAV L+G+G     G DYWI+ N W   WG  GYF+I+RG++EC IE   +A +P  K
Sbjct:  329 PCKPKENCLR--------YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTN-HAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAAIPIPK 461          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = -2
Query:  280 PAYPTPKCVRKCVKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHI-------PGDVMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 681
            P  P   C+R        + +S +  +  +    +   +  E+ K+GP+ V+F V++DF HY  G+Y H        P ++   HAV L+G+G     G +YWI+ N W  +WG  GYF+I+RG++EC IE   VA +P  K
Sbjct:  329 PCKPRENCLR--------YYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTN-HAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGYFRIRRGTDECAIESIAVAAIPIPK 461          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 49/130 (37.69%), Postives = 66/130 (50.77%), Query Frame = -2
Query:  313 TPKCVRKCVKKN-QLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDV---------MGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIKRGSNECGIE 669
            T KC    V KN   +  + +S I  Y   ++ + +  E+  NGP  V F VYEDF  YK G+Y H              +  HAV L+G+G     GE YW + N W   WG  GYF+I RG++ECG+E
Sbjct:  318 TGKCT---VSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVDKLSGEPYWKVKNSWGVEWGEQGYFRILRGTDECGVE 444          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = -2
Query:  343 VKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 645
            ++   LWR   + S+S        E +MAEIY NGP+       E  ++Y  G+Y       +  H + + GWG S+DG +YWI+ N W   WG  G+ +I
Sbjct:  184 IQNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATERMSNYTGGIYTEYQNQAIINHIISVAGWGVSNDGIEYWIVRNSWGEPWGERGWMRI 278          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = -2
Query:  343 VKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 645
            ++   LWR   + S+S        E +MAEIY NGP+       E  ++Y  G+Y       +  H + + GWG S+DG +YWI+ N W   WG  G+ +I
Sbjct:  184 IQNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSNDGIEYWIVRNSWGEPWGEKGWMRI 278          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 41/127 (32.28%), Postives = 57/127 (44.88%), Query Frame = -2
Query:  289 VKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECG--------IEEDVVAGLP 645
            +K   LW+   + S+S        E +MAEIY NGP+       E  ++Y  G+Y          H V + GWG S DG +YWI+ N W   WG  G+ +I   + + G        IEE    G P
Sbjct:  183 IKNYTLWKVGDYGSLSGR------EKMMAEIYTNGPISCGIMATEKMSNYTGGIYSEYNDQAFINHIVSVAGWGVS-DGMEYWIVRNSWGEPWGEHGWMRIVTSTYKGGEGARYNLAIEESCTFGDP 302          
The following BLAST results are available for this feature:
BLAST of CB290207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
TINAL_HUMAN3.052e-1938.52Tubulointerstitial nephritis antigen-like OS=Homo ... [more]
YCF2E_CAEEL3.987e-1941.28Uncharacterized peptidase C1-like protein F26E4.3 ... [more]
TINAL_RAT6.800e-1936.60Tubulointerstitial nephritis antigen-like OS=Rattu... [more]
CATC_BOVIN6.800e-1945.54Dipeptidyl-peptidase 1 OS=Bos taurus GN=CTSC PE=2 ... [more]
CATC_RAT4.408e-1833.80Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATC_MOUSE5.757e-1833.80Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATC_SCHMA1.086e-1637.69Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
CATZ_RAT6.586e-1433.66Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]
CATZ_MOUSE1.467e-1333.66Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]
CATZ_BOVIN7.282e-1332.28Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290207 ID=CB290207; Name=CB290207; organism=Citrus sinensis; type=EST; length=724bp
AAAGATGCGACATTTTTCAACTAAACGAATAATTCGGGGAGGAGAAACCA
AGTTATTACAACTGGTTCTATTTTTACACCCAACATTAAACTCCATTAAT
ACATTCAATTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGATAGCTT
AGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAATAACAA
CATGAAGGGATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCAAACATA
TCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAAACCAGC
AACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAATCTTGA
AGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGAATCCAG
TAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAGCATG
ACCCCCCATTACATCGCCTGGGATGTGTTTGTAAACCCCAAATTTGTAGT
GAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCATTCTTG
TAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATATGCACT
AATACTGGAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGACGCACT
TCCTCACACACTTTGGAGTAGGATATGCCGGCTCACAACCAGGGTGGGAA
CAGCCAGTACTATCAAAGTAGGGA
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