CB290207

Overview
NameCB290207
Unique NameCB290207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:772..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATZ_HUMAN (Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = -2
Query:  343 VKKNQLWRNSKHSSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKI 645
            ++   LWR   + S+S        E +MAEIY NGP+       E  A+Y  G+Y          H V + GWG S DG +YWI+ N W   WG  G+ +I
Sbjct:  182 IRNYTLWRVGDYGSLSGR------EKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRI 275          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  316 SSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYKHIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 609
            S   AY + S+ + +   +++ GPV V+  V  D  +YK GV KH   D    H V L+G+G  +D + YW L N W   WG  G+F+IKR  N CGI
Sbjct:  238 SGCYAYDLRSEKK-LRQVLHEKGPVSVAIDVV-DLTNYKSGVAKHCSVDHGLNHGVLLVGYGQENDVK-YWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYKHI-----PGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV V+F V + F  YK GVY        P DV   HAV  +G+G  ++G  YW++ N W   WG DGYFK++ G N CG+
Sbjct:  270 PVSVAFEVVKGFKQYKSGVYASTECGDTPMDV--NHAVLAVGYGV-ENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGV 346          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATC_PLAF7 (Probable cathepsin C OS=Plasmodium falciparum (isolate 3D7) GN=PF11_0174 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 42/108 (38.89%), Postives = 52/108 (48.15%), Query Frame = -2
Query:  313 IMAEIYKNGPVEVSFTVYEDFAHYKFGVY--------------------KHIPGDVMGGHAVKLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIE 567
            +M EIY+NGP+  SF    DF  Y  GVY                     +I G     HA+ L+GWG  + +G+   YWI  N W   WG +GYFKI RG N  GIE
Sbjct:  565 MMNEIYRNGPIVSSFEASPDFYDYADGVYFVEDFPHARRCTIEPKNDGVYNITGWDRVNHAIVLLGWGEEEINGKLYKYWIGRNSWGNGWGKEGYFKILRGQNFSGIE 672          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYKH-----IPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV V+F V   F  YK GVY        P DV   HAV  +G+G  +DG  YW++ N W   WG +GYFK++ G N CG+
Sbjct:  274 PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDV--NHAVLAVGYGV-EDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGV 350          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 35/80 (43.75%), Postives = 44/80 (55.00%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYKH-----IPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV ++F V   F  YK GVY        P DV   HAV  +G+G  +DG  YW++ N W   WG  GYFK++ G N CGI
Sbjct:  272 PVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDV--NHAVLAVGYGV-EDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGI 348          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYK-----HIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV V+F V  +F  YK GV+      + P DV   HAV  +G+G  DD   YW++ N W   WG +GYFK++ G N CG+
Sbjct:  272 PVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDV--NHAVLAVGYGVEDD-VPYWLIKNSWGGEWGDNGYFKMEMGKNMCGV 348          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYK----HIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV  +F V EDF  YK GVY     H   D +  HAV  +G+G   +G  YWI+ N W  +WG +GYF I+RG N CG+
Sbjct:  246 PVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVN-HAVLAVGYG-EQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGL 322          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = -2
Query:  316 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKFGVYK----HIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 582
            +D E ++  +    PV  +F V  DF  Y+ G+Y     H   D +  HAV  +G+G  ++G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  234 NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVN-HAVLAVGYG-EENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324          
BLAST of CB290207 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 36/79 (45.57%), Postives = 45/79 (56.96%), Query Frame = -2
Query:  316 PVEVSFTVYEDFAHYKFGVYK----HIPGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 540
            PV  +F V EDF  YK GVY     H   D +  HAV  +G+G   +G  YWI+ N W   WG +GYF I+RG N CG+
Sbjct:  246 PVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVN-HAVLAVGYG-EQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGL 322          
The following BLAST results are available for this feature:
BLAST of CB290207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CATZ_HUMAN9.511e-1335.64Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1[more]
CATV_GVXN1.622e-1239.80Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CYSP3_SOLLC3.614e-1243.75Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATC_PLAF78.051e-1238.89Probable cathepsin C OS=Plasmodium falciparum (iso... [more]
CYSP2_MAIZE1.794e-1143.75Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEU_ARATH2.343e-1143.75Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ALEUL_ARATH2.343e-1142.50Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CATH_RAT3.996e-1145.57Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_PIG3.996e-1137.63Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_MOUSE3.996e-1145.57Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290207 ID=CB290207; Name=CB290207; organism=Citrus sinensis; type=EST; length=724bp
AAAGATGCGACATTTTTCAACTAAACGAATAATTCGGGGAGGAGAAACCA
AGTTATTACAACTGGTTCTATTTTTACACCCAACATTAAACTCCATTAAT
ACATTCAATTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGATAGCTT
AGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAATAACAA
CATGAAGGGATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCAAACATA
TCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAAACCAGC
AACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAATCTTGA
AGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGAATCCAG
TAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACAGCATG
ACCCCCCATTACATCGCCTGGGATGTGTTTGTAAACCCCAAATTTGTAGT
GAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCATTCTTG
TAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATATGCACT
AATACTGGAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGACGCACT
TCCTCACACACTTTGGAGTAGGATATGCCGGCTCACAACCAGGGTGGGAA
CAGCCAGTACTATCAAAGTAGGGA
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