CB290215

Overview
NameCB290215
Unique NameCB290215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290215_ssr286 microsatellite CB290215_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV5_ARATH (Beta-fructofuranosidase, insoluble isoenzyme CWINV5 OS=Arabidopsis thaliana GN=CWINV5 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.963e-31
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIW--GDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQNLAYPADPSDPLL 766
            RT +HFQP KNWMNDPNGP+ YKG YHLFYQ+N NGA+      VWGHA S DLI+W  L  A+   +  DI G W+GS TIL +GK ++LYTG+   + QVQNL  P + +DP L
Sbjct:   43 RTGYHFQPPKNWMNDPNGPMIYKGIYHLFYQWNQNGAVMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPVILYTGNDRYNRQVQNLVKPKNLTDPYL 158          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: BFRA_THEMA (Beta-fructosidase OS=Thermotoga maritima GN=bfrA PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.687e-24
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  434 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYT 697
            +HF P   WMNDPNG +F+KG YH+FYQYNP    WG+I WGHAVS DL+HW HLP+A+  D   +  GV++GSA +  DGK+ ++YT
Sbjct:    6 YHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWRHLPVALYPDD--ETHGVFSGSA-VEKDGKMFLVYT 90          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SACC_BACSU (Levanase OS=Bacillus subtilis GN=sacC PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.274e-23
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI-------LSDGK---LMMLYTGSTNESVQVQNLAYPAD 748
            R  +HF P+ NWMNDPNG V+Y G YHLFYQY+P G  WG + WGHAVSKDL+ W HLP+A+  D+   I   ++GSA +          GK   L+ +YT    E  QVQ++AY  D
Sbjct:   35 RPQYHFTPEANWMNDPNGMVYYAGEYHLFYQYHPYGLQWGPMHWGHAVSKDLVTWEHLPVALYPDEKGTI---FSGSAVVDKNNTSGFQTGKEKPLVAIYT-QDREGHQVQSIAYSND 148          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCR_ZYMMO (Sucrose-6-phosphate hydrolase OS=Zymomonas mobilis GN=sacA PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  350 SEKSNRRFGSRTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTG 700
            +E + ++ G R  S  W           FH  P   WMNDPNG +F+KG YHLFYQY P   +WG + WGHA S+DL+HW  LP+A+     +D  G ++G A + ++G L ++YTG
Sbjct:   12 AEDAQKKAGKRLLSSEWY--------PGFHVTPLTGWMNDPNGLIFFKGEYHLFYQYYPFAPVWGPMHWGHAKSRDLVHWETLPVALAPGDSFDRDGCFSGCA-VDNNGVLTLIYTG 119          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: RAFD_ECOLX (Raffinose invertase OS=Escherichia coli GN=rafD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  434 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTG 700
            FH  P   WMNDPNG +++ G YH F+Q++P  A  G + WGHA S D++HW H  +A+     YD  G ++GSA +  DG L ++YTG
Sbjct:   27 FHLAPPAGWMNDPNGLIYFNGRYHAFFQHHPASAYQGPMHWGHATSTDMLHWQHELVALAPGDKYDRDGCFSGSA-VDDDGVLSLIYTG 114          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: CSCA_ECOLX (Sucrose-6-phosphate hydrolase OS=Escherichia coli GN=cscA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  434 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTG 700
            FH  P   WMNDPNG +++   YH FYQ++P    WG + WGHA S D+IHW H P+A+      D  G ++GSA +  +G L ++YTG
Sbjct:   28 FHLAPPAGWMNDPNGLIWFNDRYHAFYQHHPMSEHWGPMHWGHATSDDMIHWQHEPIALAPGDENDKDGCFSGSA-VDDNGVLSLIYTG 115          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_PSYIN (Probable sucrose-6-phosphate hydrolase OS=Psychromonas ingrahamii (strain 37) GN=Ping_0974 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.865e-17
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  395 PWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGS 703
            P+T  +    R  +H  P +  +NDPNG ++++G YHLFYQ+ P   +  D  W H  SKDL++W   P+A+    W+D  GV++G A I  D  LM+ YTG+
Sbjct:   86 PYTAPVECEFRPDWHISPPQGLLNDPNGFIYHQGQYHLFYQWYPYTCVHKDKYWAHLTSKDLVNWQWQPVALTPSDWFDSYGVFSGHA-ISQDDLLMLFYTGN 187          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INU2_ASPFI (Inulinase OS=Aspergillus ficuum GN=inu2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSA-------TILSDG---KLMMLYTG-STNESVQVQNLAYPAD 748
            R ++HF P + WMN+PNG +     +HLF+Q+NP   +WG+I WGHA S DL+HW H P A +AD+  + +  +TG+A       + L D      +  +TG +T+   Q Q LA+  D
Sbjct:   29 RPSYHFTPDQYWMNEPNGLIKIGSTWHLFFQHNPTANVWGNICWGHATSTDLMHWAHKPTA-IADE--NGVEAFTGTAYYDPNNTSGLGDSANPPYLAWFTGYTTSSQTQDQRLAFSVD 144          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV1_SCHPO (Invertase OS=Schizosaccharomyces pombe GN=inv1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYD--IMGVWTGSATI-------------LSDGKLMMLYTGSTNESVQVQNLAYPAD 748
            R   HF P   +MNDPNG V+  G YH+F+QY+P     G++ WGH VSKDLIHW + P+A+  D+  +  +   ++GSA +             + + +++++YT       + Q +AY  D
Sbjct:   83 RPKIHFTPSSGFMNDPNGLVYTGGVYHMFFQYSPKTLTAGEVHWGHTVSKDLIHWENYPIAIYPDEHENGVLSLPFSGSAVVDVHNSSGLFSNDTIPEERIVLIYTDHWTGVAERQAIAYTTD 205          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_BACSU (Sucrose-6-phosphate hydrolase OS=Bacillus subtilis GN=sacA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNE 712
            R  FH  P    +NDPNG +++KG YH+F+Q+ P     G   WGH  ++D+++W    +A+    W+D  G ++GSA +  D +L + YTG+  +
Sbjct:   29 RQHFHIMPPVGLLNDPNGVIYWKGSYHVFFQWQPFQTGHGAKFWGHYTTQDVVNWKREEIALAPSDWFDKNGCYSGSA-VTKDDRLYLFYTGNVRD 123          
The following BLAST results are available for this feature:
BLAST of CB290215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
INV5_ARATH2.963e-3156.03Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
BFRA_THEMA2.687e-2455.68Beta-fructosidase OS=Thermotoga maritima GN=bfrA P... [more]
SACC_BACSU2.274e-2348.31Levanase OS=Bacillus subtilis GN=sacC PE=1 SV=1[more]
SCR_ZYMMO5.602e-2241.88Sucrose-6-phosphate hydrolase OS=Zymomonas mobilis... [more]
RAFD_ECOLX2.877e-1844.94Raffinose invertase OS=Escherichia coli GN=rafD PE... [more]
CSCA_ECOLX2.877e-1844.94Sucrose-6-phosphate hydrolase OS=Escherichia coli ... [more]
SCRB_PSYIN1.865e-1739.81Probable sucrose-6-phosphate hydrolase OS=Psychrom... [more]
INU2_ASPFI3.517e-1638.66Inulinase OS=Aspergillus ficuum GN=inu2 PE=3 SV=1[more]
INV1_SCHPO7.835e-1634.15Invertase OS=Schizosaccharomyces pombe GN=inv1 PE=... [more]
SCRB_BACSU3.888e-1535.42Sucrose-6-phosphate hydrolase OS=Bacillus subtilis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290215 ID=CB290215; Name=CB290215; organism=Citrus sinensis; type=EST; length=774bp
GCCCTATGATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGCG
CCACATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCCT
CTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCTT
GGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCCG
ATAATGGATCAATAGCCCCTGCTAACGTTATTGATAATGACAATAATAAT
GTTAATGATAATGCAAAAAATGGGCTTAATGATGTGTCGTCGTCGTCGAA
AGAGCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTGT
CTGAGAAGTCGAACCGGCGGTTTGGTTCAAGGACGGCGTCGTATCCCTGG
ACCAATAATATGCTGTCGTGGCAAAGGACCGCCTTCCACTTTCAACCCCA
AAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGGT
ACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACATA
GTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCCC
GTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACCG
GCTCTGCTACAATCCTATCTGATGGAAAACTTATGATGTTGTACACTGGA
TCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACCC
ATCTGATCCTCTCCTCATCAAATG
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