CB290215

Overview
NameCB290215
Unique NameCB290215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290215_ssr286 microsatellite CB290215_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV_DEBOC (Invertase OS=Debaryomyces occidentalis GN=INV PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  419 WQRTAFHFQPQKNWMNDPNGPVFY----KGWYHLFYQYNPNGAIWGD-IVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGS-------------ATILSDGKLMMLYTGSTNESVQVQNLAYPAD 748
            + R   HF P+K WMNDPNG +FY    K W HL++QYNPN   WG  + WGHA S DL+HW    +A+  +  +D  G+++GS             ++I  + +++ +YT +  + +Q Q++A+  D
Sbjct:   34 YNRPLIHFTPEKGWMNDPNG-LFYDKTAKLW-HLYFQYNPNATAWGQPLYWGHATSNDLVHWDEHEIAIGPE--HDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPD-LQTQDIAFSLD 156          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_SALTY (Sucrose-6-phosphate hydrolase OS=Salmonella typhimurium GN=scrB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  434 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGS 703
            +H  P    MNDPNG + + G YHLFYQ+NP         W H  S DL+HW H P+A++ D+ YD  G ++GSA + ++G L + YTG+
Sbjct:   30 WHHAPVTGLMNDPNGFIEFAGRYHLFYQWNPLACDHTFKCWAHWSSIDLLHWQHEPIALMPDEEYDRNGCYSGSA-VDNNGTLTLCYTGN 118          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_KLEPN (Sucrose-6-phosphate hydrolase OS=Klebsiella pneumoniae GN=scrB PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  434 FHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGS 703
            +H  P    +NDPNG     G YHLFYQ+NP         WGH  S DL+HW H P+A++ D+ YD  G ++GSA +  +G L + YTG+
Sbjct:   30 WHLAPVNGLLNDPNGFCQVAGRYHLFYQWNPLACDHTYKCWGHWSSADLLHWRHEPIALMPDEEYDRNGCYSGSA-VEFEGALTLCYTGN 118          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB2_VIBCH (Probable sucrose-6-phosphate hydrolase OS=Vibrio cholerae PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQ 727
            R  +H  P +  +NDPNG ++++G YHLFYQ++P      D  W H  S DL+HW    +A+    W+D  GV++G A +     L + YTG+T   V  Q
Sbjct:   94 RPLWHISPPQGLLNDPNGFIYHQGEYHLFYQWHPFVCEHKDKYWVHLKSLDLVHWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNTRLGVDRQ 193          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV4_YEAST (Invertase 4 OS=Saccharomyces cerevisiae GN=SUC4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFY---KGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI 664
            R   HF P K WMNDPNG ++Y   +G +HL++QYNPN  +WG  + WGHA S DL HW   P+A+   +  +  G ++GS  I
Sbjct:   28 RPLVHFTPNKGWMNDPNG-LWYDAKEGKWHLYFQYNPNDTVWGLPLFWGHATSNDLTHWQDEPVAIAPKR--NDSGAYSGSMVI 108          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_VIBC3 (Probable sucrose-6-phosphate hydrolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cscA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  380 RTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQ 727
            + A+ P+   +    R  +H  P +  +NDPNG ++++  YHLFYQ++P      D  W H  S DL+HW    +A+    W+D  GV++G A +     L + YTG+T    + Q
Sbjct:   79 KRATLPYQTALDCPYRPQWHISPPQGLLNDPNGFIYHQEEYHLFYQWHPFACEHKDKYWVHLKSLDLVHWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNTRLGTERQ 193          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV1_YEAST (Invertase 1 OS=Saccharomyces cerevisiae GN=SUC1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFY---KGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI 664
            R   HF P K WMNDPNG ++Y   +G +HL++QYNPN  +WG  + WGHA S DL HW   P+A +A +  D  G ++GS  I
Sbjct:   28 RPLVHFTPNKGWMNDPNG-LWYDAKEGKWHLYFQYNPNDTVWGLPLFWGHATSDDLTHWQDEPVA-IAPKRKD-SGAYSGSMVI 108          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV_DEBHA (Invertase OS=Debaryomyces hansenii GN=INV PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  416 SWQRTAFHFQPQKNWMNDPNGPVFYK--GWYHLFYQYNPNGAIWGD-IVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGS-------------ATILSDGKLMMLYTGSTNESVQVQNLAYPAD 748
            ++ R   H  P   W+NDPNG  + K    +H +YQYNPN  IWG  + WGH+ SKDL HW    +A+      D  G+++GS              +I  D +++ +YT S  ++ Q Q++AY  D
Sbjct:   32 AYNRPLIHLTPNVGWLNDPNGLFYDKKTSVWHAYYQYNPNDTIWGQPLYWGHSSSKDLTHWEEHQVALGPQN--DDEGIFSGSIVIDYNNTSGFFDESIDKDQRVVAIYTNSIPDT-QTQDIAYSLD 155          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB1_VIBCH (Probable sucrose-6-phosphate hydrolase OS=Vibrio cholerae GN=VC_A0655 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQ 727
            R  +H  P +  +NDPNG ++++G YHLFYQ++P      D  W H  S DL+ W    +A+    W+D  GV++G A +     L + YTG+T   V  Q
Sbjct:   94 RPLWHISPPQGLLNDPNGFIYHQGEYHLFYQWHPFACEHKDKYWVHLKSLDLVDWQWQSVALTPSDWFDSHGVFSGHA-VSHQQDLWLFYTGNTRLGVDRQ 193          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_PEDPE (Sucrose-6-phosphate hydrolase OS=Pediococcus pentosaceus GN=scrB PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGS 703
            R   H QP    +NDPNG  ++ G +HLFYQ  P G + G   W H  SK+L+ W+   LA+  D  YD  G +TG+A  + D +L ++YTG+
Sbjct:   33 RMQHHIQPTSGLLNDPNGFSYFDGQWHLFYQVFPFGPVHGLKSWQHVTSKNLVDWHDEGLAIRPDTPYDSHGAYTGTALPIDD-QLFIMYTGN 124          
The following BLAST results are available for this feature:
BLAST of CB290215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
INV_DEBOC3.888e-1535.94Invertase OS=Debaryomyces occidentalis GN=INV PE=3... [more]
SCRB_SALTY8.663e-1543.33Sucrose-6-phosphate hydrolase OS=Salmonella typhim... [more]
SCRB_KLEPN1.930e-1443.33Sucrose-6-phosphate hydrolase OS=Klebsiella pneumo... [more]
SCRB2_VIBCH1.930e-1437.62Probable sucrose-6-phosphate hydrolase OS=Vibrio c... [more]
INV4_YEAST3.292e-1445.24Invertase 4 OS=Saccharomyces cerevisiae GN=SUC4 PE... [more]
SCRB_VIBC35.615e-1432.76Probable sucrose-6-phosphate hydrolase OS=Vibrio c... [more]
INV1_YEAST5.615e-1447.62Invertase 1 OS=Saccharomyces cerevisiae GN=SUC1 PE... [more]
INV_DEBHA7.333e-1434.65Invertase OS=Debaryomyces hansenii GN=INV PE=3 SV=... [more]
SCRB1_VIBCH9.578e-1436.63Probable sucrose-6-phosphate hydrolase OS=Vibrio c... [more]
SCRB_PEDPE1.251e-1340.86Sucrose-6-phosphate hydrolase OS=Pediococcus pento... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290215 ID=CB290215; Name=CB290215; organism=Citrus sinensis; type=EST; length=774bp
GCCCTATGATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGCG
CCACATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCCT
CTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCTT
GGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCCG
ATAATGGATCAATAGCCCCTGCTAACGTTATTGATAATGACAATAATAAT
GTTAATGATAATGCAAAAAATGGGCTTAATGATGTGTCGTCGTCGTCGAA
AGAGCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTGT
CTGAGAAGTCGAACCGGCGGTTTGGTTCAAGGACGGCGTCGTATCCCTGG
ACCAATAATATGCTGTCGTGGCAAAGGACCGCCTTCCACTTTCAACCCCA
AAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGGT
ACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACATA
GTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCCC
GTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACCG
GCTCTGCTACAATCCTATCTGATGGAAAACTTATGATGTTGTACACTGGA
TCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACCC
ATCTGATCCTCTCCTCATCAAATG
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