CB290215

Overview
NameCB290215
Unique NameCB290215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290215_ssr286 microsatellite CB290215_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_LACLA (Sucrose-6-phosphate hydrolase OS=Lactococcus lactis subsp. lactis GN=scrB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  308 ERLRPFTSASSAGVSEKSNRRFGSRTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGS 703
            +R R + S S + +  +S R+   ++   PW +N        FH +P+   +NDPNG  ++   +HLFYQ+ P G + G   W H VS DL+H+    L +  D  YD  GV++GSA +  +  L ++YTG+
Sbjct:    7 QRYRTYDSYSESDL--ESLRKLALKS---PWKSN--------FHIEPETGLLNDPNGFSYFNEKWHLFYQHFPFGPVHGLKSWVHLVSDDLVHFEKTGLVLYPDTKYDNAGVYSGSA-LAFENFLFLIYTGN 124          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INVX_SCHPO (Putative invertase OS=Schizosaccharomyces pombe GN=SPAC8E11.01c PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILS-------------------DGKLMMLYTGSTNESVQVQNLAYPAD 748
            R   HF P + +MNDPNG V+  G +HLF+Q+NP G   G+  WGHAVSK+L  W  LP A+     + +M  ++GSA I                     + +++++YT +  ++ + QN+AY  D
Sbjct:    4 RPCIHFTPPEGFMNDPNGLVYSNGKWHLFFQWNPTGNQAGNQHWGHAVSKNLYKWKLLPTALAPGDDHGLM--FSGSAVIDKTNSSGFFESGFFSRKSVDPEERIVLIYT-THYDNRETQNIAYSLD 127          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_STRMU (Sucrose-6-phosphate hydrolase OS=Streptococcus mutans GN=scrB PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  401 TNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNESVQVQN 730
            TN  LS   T +H +P+   +NDPNG  ++ G ++LFYQ  P GA  G   W H  S+DL+H+      +  D  +D  G ++GSA  + D +L + YTG+  +   V++
Sbjct:   25 TNVALSPWHTTYHIEPKTGLLNDPNGFSYFNGKFNLFYQNWPFGAAHGLKSWIHTESEDLVHFKETGTVLYPDTSHDSHGAYSGSAYEIGD-QLFLFYTGNVRDENWVRH 133          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INU1_KLUMA (Inulinase OS=Kluyveromyces marxianus GN=INU1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 2
Query:  401 TNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGW---YHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI 664
            TN   S  R + HF P   WMNDPNG ++Y      +HL+YQYNP   IWG  + WGHAVSKDL  W     ++      D  G ++GS  I
Sbjct:   31 TNTTFSLNRPSVHFTPSHGWMNDPNG-LWYDAKEEDWHLYYQYNPAATIWGTPLYWGHAVSKDLTSWTDYGASLGPGS--DDAGAFSGSMVI 119          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SCRB_VIBAL (Sucrose-6-phosphate hydrolase OS=Vibrio alginolyticus GN=scrB PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  431 AFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILSDGKLMMLYTGSTNE 712
            +FH  P+   +NDPNG  ++ G +H+FYQ+ P G + G   W H  +KD IH+    + +  DQ YD  GV++G A ++ + ++++ +TG+  +
Sbjct:   39 SFHIAPKFGLLNDPNGLCYFNGEHHIFYQWTPVGPVHGMKYWYHLSTKDFIHFTDHGVGLHPDQDYDSHGVYSGGA-LVENNQVLLFFTGNKRD 131          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: SACC_BACL7 (Levanase (Fragment) OS=Bacillus sp. (strain L7) PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 2
Query:  395 PWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI----------LSDGKLMMLYTGSTN----ESVQVQNLAYPAD 748
            P+ +      R  +H+ P +   +DPNG V+++G YHLF+Q            W HAVS+DLIHW  LP+A+    W D+  VW+GSA             S GK ++ Y  S N       Q   LAY  D
Sbjct:  388 PYASYYTEKYRPQYHYSPIRGSASDPNGLVYFEGEYHLFHQDGGQ--------WAHAVSRDLIHWKRLPIAL---PWNDLGHVWSGSAVADTTNASGLFGSSGGKGLIAYYTSYNPDRHNGNQKIGLAYSTD 508          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV2_YEAST (Invertase 2 OS=Saccharomyces cerevisiae GN=SUC2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFY---KGWYHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI 664
            R   HF P K WMNDPNG ++Y      +HL++QYNPN  +WG  + WGHA S DL +W   P+A+   +  +  G ++GS  +
Sbjct:   28 RPLVHFTPNKGWMNDPNG-LWYDEKDAKWHLYFQYNPNDTVWGTPLFWGHATSDDLTNWEDQPIAIAPKR--NDSGAFSGSMVV 108          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: INV_KLULA (Invertase OS=Kluyveromyces lactis GN=INV1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  335 SSAGVSEKSNRRFGSRTASYPWTNNM---LSWQRTAFHFQPQKNWMNDPNGPVFYKGW---YHLFYQYNPNGAIWG-DIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATI 664
            +SA V  + +    +  + +  T+N    LS  R A H+ P++ WMNDPNG ++Y      +H++YQY P+   WG  + WGHAVSKDL  W    +A   +  ++  G ++GS  I
Sbjct:   12 ASAAVIHRRDANISAIASEWNSTSNSSSSLSLNRPAVHYSPEEGWMNDPNG-LWYDAKEEDWHIYYQYYPDAPHWGLPLTWGHAVSKDLTVWDEQGVAFGPE--FETAGAFSGSMVI 125          
BLAST of CB290215 vs. ExPASy Swiss-Prot
Match: FRUA_STRMU (Fructan beta-fructosidase OS=Streptococcus mutans GN=fruA PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 2
Query:  425 RTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVAD 619
            R  +H+  +  W NDPNG V+Y G YHLF+Q+  +   WG + W HA S DLIHW   P+A   D
Sbjct:  444 RDQYHYSVKDGWANDPNGLVYYNGVYHLFHQFY-DDTKWGPMHWAHATSTDLIHWKEEPIAFYPD 507          
The following BLAST results are available for this feature:
BLAST of CB290215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
SCRB_LACLA1.251e-1334.09Sucrose-6-phosphate hydrolase OS=Lactococcus lacti... [more]
INVX_SCHPO2.134e-1334.65Putative invertase OS=Schizosaccharomyces pombe GN... [more]
SCRB_STRMU1.383e-1235.45Sucrose-6-phosphate hydrolase OS=Streptococcus mut... [more]
INU1_KLUMA1.383e-1243.48Inulinase OS=Kluyveromyces marxianus GN=INU1 PE=1 ... [more]
SCRB_VIBAL1.806e-1234.04Sucrose-6-phosphate hydrolase OS=Vibrio alginolyti... [more]
SACC_BACL72.359e-1234.85Levanase (Fragment) OS=Bacillus sp. (strain L7) PE... [more]
INV2_YEAST3.081e-1241.67Invertase 2 OS=Saccharomyces cerevisiae GN=SUC2 PE... [more]
INV_KLULA6.864e-1235.04Invertase OS=Kluyveromyces lactis GN=INV1 PE=3 SV=... [more]
FRUA_STRMU6.864e-1246.15Fructan beta-fructosidase OS=Streptococcus mutans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290215 ID=CB290215; Name=CB290215; organism=Citrus sinensis; type=EST; length=774bp
GCCCTATGATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGCG
CCACATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCCT
CTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCTT
GGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCCG
ATAATGGATCAATAGCCCCTGCTAACGTTATTGATAATGACAATAATAAT
GTTAATGATAATGCAAAAAATGGGCTTAATGATGTGTCGTCGTCGTCGAA
AGAGCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTGT
CTGAGAAGTCGAACCGGCGGTTTGGTTCAAGGACGGCGTCGTATCCCTGG
ACCAATAATATGCTGTCGTGGCAAAGGACCGCCTTCCACTTTCAACCCCA
AAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGGT
ACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACATA
GTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCCC
GTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACCG
GCTCTGCTACAATCCTATCTGATGGAAAACTTATGATGTTGTACACTGGA
TCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACCC
ATCTGATCCTCTCCTCATCAAATG
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