CB290274

Overview
NameCB290274
Unique NameCB290274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2896 contig Csv1_Contig2896:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_BORBR (Pyridoxine kinase OS=Bordetella bronchiseptica GN=pdxK PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.321e-14
Identity = 57/179 (31.84%), Postives = 86/179 (48.04%), Query Frame = 1 
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            V+SIQS  V G VGN  AV      G  V  + +V  SN   YP+  G  +        +  L A   L    ++  GY+G  +    + + +  L ++ P+L    DPV+GD +  +YV   +V+ YR+ ++P+A  LTPN FE E LTG   G+      A + L       V++TS
Sbjct:   18 VVSIQSQVVYGQVGNSVAVPVFNGFGLRVAAVPTVVLSNTPHYPSMHGGAVPLDWFEGYLADLGARGALAGVRVVQLGYLGGPAQAEALGRWIAGLVAVRPDLRVHIDPVIGDHDSGVYVAPGMVAAYRDHLLPLAQGLTPNGFELECLTGLPTGTMEQTIAAARTLLGGRARWVIVTS 196
[Close]
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_BORPE (Pyridoxine kinase OS=Bordetella pertussis GN=pdxK PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 56/179 (31.28%), Postives = 84/179 (46.93%), Query Frame = 1 
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            V+SIQS  V G VGN  AV      G  V  + +V  SN   YP+  G  +        +  L A   L    ++  GY+G  +    + + +  L +  P+L    DPV+GD +  +YV   +V+ YR+ ++ +A  LTPN FE E LTG   G+      A + L       V++TS
Sbjct:   18 VVSIQSQVVYGQVGNSVAVPVFNGFGLRVAAVPTVVLSNTPHYPSMHGGAVPLDWFEGYLADLGARGALAGVRVVQLGYLGGPAQAEALGRWIAGLVAERPDLRVHIDPVIGDHDSGVYVAPGMVAAYRDHLLSLAQGLTPNGFELECLTGLPTGTMEQTIAAARTLLGGRARWVIVTS 196
The following BLAST results are available for this feature:
BLAST of CB290274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PDXK_BORBR5.321e-1431.84Pyridoxine kinase OS=Bordetella bronchiseptica GN=... [more]
PDXK_BORPE2.236e-1231.28Pyridoxine kinase OS=Bordetella pertussis GN=pdxK ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290274 ID=CB290274; Name=CB290274; organism=Citrus sinensis; type=EST; length=744bp
GCCCTTAGGAGTTGCCGTCCTTGTTTGGGCACTTCCCGAAACCTCACGTT
TTCCGGCTTGATAGCAGCTTCCGATTGGATTTGTAGGAGGAGAAGCTCGA
GCATATCAGGAATGGCGCCTCCGATTCTCTCATTGGCTTTACCTTCGGAG
ACTGGTCGAGTTTTGAGCATACAGTCGCATACTGTTCAGGGGTATGTTGG
AAATAAATCAGCTGTCTTTCCTCTCCAACTACTGGGCTATGACGTGGATC
CAATCCATTCAGTACAGTTCTCAAACCACACAGGATACCCAACTTTCAAG
GGCCAAGTTTTGAATGGACAACAATTATGCGACTTAATAGAAGGACTGGA
AGCCAATAATCTATTGTACTATACTCATTTATTAACAGGTTATATTGGTT
CTGTTTCTTTTCTGAACACGATACTGCAAGTTGTTGAAAAGCTTCGCTCT
ATAAACCCAAATCTGATATACGTTTGTGATCCAGTGATGGGTGACGAGGG
AAAGCTCTATGTTCCTTCCGAGCTAGTATCAGTATACCGTGAGAAGGTTG
TTCCAGTGGCCTCAATGTTGACCCCTAATCAGTTTGAAGCAGAACAGTTG
ACTGGTTTCAGGATTGGGAGTGAAGCAGATGGGAGGGAAGCTTGTAAGAT
TCTTCATGCTGCTGGACCTGCAAAGGTTGTGATCACAAGCATAAATATAG
ATGGCAATCTTTTCCTGATTGGCAGTCATCAGAAGGAAAAGGGT
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