CB290274

Overview
NameCB290274
Unique NameCB290274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2896 contig Csv1_Contig2896:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_YERPE (Pyridoxamine kinase OS=Yersinia pestis GN=pdxY PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 66/185 (35.68%), Postives = 109/185 (58.92%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG 705
            +LSIQSH V G+ GN +A FP++ +G +V P+++VQFSNHT Y  + G V+    L D+++G+ + + L     +L+GYIGS    + IL  V +++  NP+  Y CDPVMG  ++G +  P  +   +  + +P + M+ PN  E EQL+G R+ +     +  + L A GP  V++  ++  G
Sbjct:    4 ILSIQSHVVFGHAGNSAAEFPMRRMGVNVWPLNTVQFSNHTQYGHWTGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPG-VAEFFCNEALPASDMIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAG 187          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_YERPA (Pyridoxamine kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pdxY PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 66/185 (35.68%), Postives = 109/185 (58.92%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG 705
            +LSIQSH V G+ GN +A FP++ +G +V P+++VQFSNHT Y  + G V+    L D+++G+ + + L     +L+GYIGS    + IL  V +++  NP+  Y CDPVMG  ++G +  P  +   +  + +P + M+ PN  E EQL+G R+ +     +  + L A GP  V++  ++  G
Sbjct:    4 ILSIQSHVVFGHAGNSAAEFPMRRMGVNVWPLNTVQFSNHTQYGHWTGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPG-VAEFFCNEALPASDMIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAG 187          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_PHOLL (Pyridoxamine kinase OS=Photorhabdus luminescens subsp. laumondii GN=pdxY PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.720e-26
Identity = 65/185 (35.14%), Postives = 111/185 (60.00%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG 705
            +LSIQSH V G+ GN +A FP++ +G +V P+++VQFSNHT Y  +KG V+    L ++++G+E    L   H +L+GYIGS      I+ +V++++++NP+  Y CDPVMG  ++G + VP  +     +  +PV+ ++ PN  E E L+  ++ +      A + L   GP  V++  ++  G
Sbjct:    4 ILSIQSHVVFGHAGNSAAEFPMRRMGVNVWPLNTVQFSNHTQYAQWKGCVMPANHLTEIVQGIEEIEQLKSCHAVLSGYIGSAEQGGHIIDIVKRVKAVNPDAWYFCDPVMGHPEKGCIVVPG-VAEFLCKDALPVSDIIAPNLLELETLSMQKVTNVEQAVMAARTLCDKGPDIVLVKHLSRAG 187          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURCA (Pyridoxamine kinase OS=Burkholderia cenocepacia (strain AU 1054) GN=pdxY PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.720e-26
Identity = 61/180 (33.89%), Postives = 106/180 (58.89%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            VLSIQSH + G+ GN +AVFP+Q LG +V P+++VQ SNH  Y  + G  ++  ++  L++G+ A  +L     +L+G++GS       +++V  ++++NPN  Y CDP MG  G +     +     E+V  +A  ++PN  E ++L G RI + A+  +AC+ L   GP  +++  ++
Sbjct:    4 VLSIQSHVIYGHAGNSAAVFPMQRLGINVWPLNTVQLSNHMQYGHWAGSAIDAAKMEQLVDGIAAIGVLKRCDAVLSGFLGSPPQARAAVEIVRTVKAMNPNAWYFCDPAMGQTGGIRPEPGVEEFIVEEVPALADGMSPNHTELQKLAGRRIETVAEAVDACRALIRRGPQIILVKHLH 183          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_VIBF1 (Pyridoxamine kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=pdxY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.553e-26
Identity = 72/186 (38.71%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  157 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPT-FKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG 705
            R+LSIQSH V G  GN +AVFP++ +G +V PI++VQFSNHT Y   +KG  +    + +L++GL A         +L+GY+GS +    I+  V K++  NPN IY CDPVMG   K   V  E+ + ++E  +  A ++ PN  E E LTG  I +     EA   L   G   VV+  ++  G
Sbjct:    3 RILSIQSHVVFGCAGNSAAVFPMRRMGMEVWPINTVQFSNHTQYQQGWKGIAMPAGHISELVDGLSAIEATQVCDAVLSGYLGSAAQGQEIVTAVNKIKQDNPNAIYFCDPVMGHPEKGCIVAPEVETFFKESALSSADIIAPNLLELESLTGMTINTLDQVIEANNQLLEKGVKMVVVKHLSRAG 188          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ACTSZ (Pyridoxamine kinase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=pdxY PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 72/187 (38.50%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEA-NNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV----PVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG 705
            VLSIQSH V GY GNKS+ FP+QL G DV  +++VQFSNHT Y  + G V+  QQ+ ++ +G++A   L     +L+GYIGS   +  I++V   +++ N   +Y+CDPVMG   K  V ++ V   RE ++    P A ++TPN  E  +L+G R  +      A + L   GP  V++  +   G
Sbjct:    4 VLSIQSHVVFGYAGNKSSTFPMQLSGIDVWALNTVQFSNHTQYGKWTGMVVPHQQIPEIADGIDAIGELKNCDAVLSGYIGSADQVAEIVKVSHLVKTRNAAALYLCDPVMGSAEKGCVVADGV---REGLIDIALPQADIITPNLLELRELSGLRAENFEQAVIAAQHLLTKGPKTVIVKHLGSAG 187          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURS3 (Pyridoxamine kinase OS=Burkholderia sp. (strain 383) GN=pdxY PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.914e-26
Identity = 60/180 (33.33%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            VLSIQSH + G+ GN +AVFP+Q LG +V P+++VQ SNH  Y  + G  ++  ++  L++G+ A   L     +L+G++GS       +++V  ++++NPN  Y CDP MG  G +     +     +++  +A  ++PN  E ++L G RI + A+  EAC+ L   GP  +++  ++
Sbjct:    4 VLSIQSHVIYGHAGNSAAVFPMQRLGINVWPLNTVQLSNHMQYGHWAGSAIDAAKMEQLVDGIAAIGALKRCDAVLSGFLGSPPQARAAVEIVRSVKAMNPNAWYFCDPAMGQTGGIRPEPGVEEFMVQEMPALADGMSPNHTELQKLAGRRIETVAEAVEACRALIRRGPQIILVKHLH 183          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_PROMI (Pyridoxamine kinase OS=Proteus mirabilis GN=pdxY PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYP-TFKGQVLNGQQLCDLIEGLEA-NNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADG-REACKILHAAGPAKVVITSINIDG 705
            +LSIQSH V G+ GN  A FP + +G +V P+++VQFSNHT YP  + G V+  + + ++++G+ A   L     +L+GY+GS      I+ +V+K++  NPN  Y CDPVMG   K   VP E+  V  E  +P++ ++ PN  E E L G       D   +A + L   GP  V++  ++  G
Sbjct:    4 ILSIQSHVVFGHAGNSXAEFPXRRMGVNVWPLNTVQFSNHTQYPEKWTGCVMXAEHITEIVDGIAAIGKLAQCDAVLSGYLGSAEQGRRIVDIVKKVKQANPNAWYFCDPVMGHPEKGCIVPPEVSGVLCEDALPISDIIAPNLLELETLAGGATLHNVDQCVKAARQLCQQGPKIVLVKHLSRAG 189          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURP8 (Pyridoxamine kinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=pdxY PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 60/176 (34.09%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            VLSIQSH V G+ GN ++ FP++ LG +V P+++VQFSNHT Y  ++G  ++  Q+  L+EG+ A  +L     +L+GY+G+      ++++V  +++ NP+ +Y CDPVMG      V   +       +  V+ ++ PN  E ++L G  I +  +   AC+ L   GP  V++
Sbjct:    4 VLSIQSHVVFGHAGNGASEFPMRRLGVNVWPLNTVQFSNHTQYGHWEGSAIDASQMLALVEGIGAIGMLPRCDAVLSGYLGTPEQAQAVIEIVRAVKAANPHALYFCDPVMGTATGYRVEPGIQEFLVRTMPEVSDVMCPNHSELQRLVGREIETVEEAVAACRELMKRGPKMVLV 179          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_BURTA (Pyridoxamine kinase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=pdxY PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.700e-25
Identity = 59/180 (32.78%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 696
            VLSIQSH + G+ GN +AVFP+Q LG +V P+++VQ SNH  Y  + G  ++  ++  L++G+ A   L     +L+G++GS +     +++V  +++ NPN  Y CDP MG  G +     +      ++  +A  + PN  E ++L G RI + A+  EAC+ +   GP  +++  ++
Sbjct:    4 VLSIQSHVIYGHAGNSAAVFPMQRLGVNVWPLNTVQLSNHMQYGHWAGSAIDAAKMEQLVDGIAAIGALKRCDAVLSGFLGSPAQARAAVEIVRTVKATNPNAWYFCDPAMGQTGGIRPEPGVEEFIVAELPELADGMAPNHGELQKLAGQRIETVAEAVEACRSIIRRGPRLILVKHLH 183          
The following BLAST results are available for this feature:
BLAST of CB290274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PDXY_YERPE2.083e-2635.68Pyridoxamine kinase OS=Yersinia pestis GN=pdxY PE=... [more]
PDXY_YERPA2.083e-2635.68Pyridoxamine kinase OS=Yersinia pestis bv. Antiqua... [more]
PDXY_PHOLL2.720e-2635.14Pyridoxamine kinase OS=Photorhabdus luminescens su... [more]
PDXY_BURCA2.720e-2633.89Pyridoxamine kinase OS=Burkholderia cenocepacia (s... [more]
PDXY_VIBF13.553e-2638.71Pyridoxamine kinase OS=Vibrio fischeri (strain ATC... [more]
PDXY_ACTSZ6.060e-2638.50Pyridoxamine kinase OS=Actinobacillus succinogenes... [more]
PDXY_BURS37.914e-2633.33Pyridoxamine kinase OS=Burkholderia sp. (strain 38... [more]
PDXY_PROMI3.007e-2536.56Pyridoxamine kinase OS=Proteus mirabilis GN=pdxY P... [more]
PDXY_BURP83.928e-2534.09Pyridoxamine kinase OS=Burkholderia phymatum (stra... [more]
PDXY_BURTA6.700e-2532.78Pyridoxamine kinase OS=Burkholderia thailandensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290274 ID=CB290274; Name=CB290274; organism=Citrus sinensis; type=EST; length=744bp
GCCCTTAGGAGTTGCCGTCCTTGTTTGGGCACTTCCCGAAACCTCACGTT
TTCCGGCTTGATAGCAGCTTCCGATTGGATTTGTAGGAGGAGAAGCTCGA
GCATATCAGGAATGGCGCCTCCGATTCTCTCATTGGCTTTACCTTCGGAG
ACTGGTCGAGTTTTGAGCATACAGTCGCATACTGTTCAGGGGTATGTTGG
AAATAAATCAGCTGTCTTTCCTCTCCAACTACTGGGCTATGACGTGGATC
CAATCCATTCAGTACAGTTCTCAAACCACACAGGATACCCAACTTTCAAG
GGCCAAGTTTTGAATGGACAACAATTATGCGACTTAATAGAAGGACTGGA
AGCCAATAATCTATTGTACTATACTCATTTATTAACAGGTTATATTGGTT
CTGTTTCTTTTCTGAACACGATACTGCAAGTTGTTGAAAAGCTTCGCTCT
ATAAACCCAAATCTGATATACGTTTGTGATCCAGTGATGGGTGACGAGGG
AAAGCTCTATGTTCCTTCCGAGCTAGTATCAGTATACCGTGAGAAGGTTG
TTCCAGTGGCCTCAATGTTGACCCCTAATCAGTTTGAAGCAGAACAGTTG
ACTGGTTTCAGGATTGGGAGTGAAGCAGATGGGAGGGAAGCTTGTAAGAT
TCTTCATGCTGCTGGACCTGCAAAGGTTGTGATCACAAGCATAAATATAG
ATGGCAATCTTTTCCTGATTGGCAGTCATCAGAAGGAAAAGGGT
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