CB290274

Overview
NameCB290274
Unique NameCB290274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2896 contig Csv1_Contig2896:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ECOLI (Pyridoxamine kinase OS=Escherichia coli (strain K12) GN=pdxY PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ECOUT (Pyridoxamine kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=pdxY PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHPVNNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ECOL5 (Pyridoxamine kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pdxY PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHPVNNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ECO57 (Pyridoxamine kinase OS=Escherichia coli O157:H7 GN=pdxY PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHPVNNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_ECOL6 (Pyridoxamine kinase OS=Escherichia coli O6 GN=pdxY PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 61/178 (34.27%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHPVKNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SHIFL (Pyridoxamine kinase OS=Shigella flexneri GN=pdxY PE=3 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 60/178 (33.71%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L   GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIEQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXY_SHIDS (Pyridoxamine kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pdxY PE=3 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 60/178 (33.71%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 684
            +L+IQSH V G+ GN +  FP++ LG +V P+++VQFSNHT Y  + G V+    L ++++G+ A + L+    +L+GY+GS      IL +V ++++ NP   Y CDPVMG  ++G +  P  +   +    +P + ++ PN  E E L    + +  +   A + L A GP  V++
Sbjct:    5 ILAIQSHVVYGHAGNSAVEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPG-VAEFHVRHGLPASDIIAPNLVELEILCEHPVNNVEEAVLAARELIAQGPQIVLV 181          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_BORA1 (Pyridoxine kinase OS=Bordetella avium (strain 197N) GN=pdxK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            V+S+QS  V G+VGN  A   L+  G     + +V  SN   YPT  G  L        ++ L+A   L     +L GY+GS      + + + ++R ++P ++ + DPVMGD+   LYV   L    RE +VP A  LTPN FE   LTG  +G       A + L A G   VV+TS
Sbjct:   18 VVSVQSQVVYGHVGNNVAAPALRAHGLHPGIVPTVLLSNTPHYPTLHGGALPLSWFEGYLQDLQARGALQALRAILVGYLGSAEQARVLGRWIARIREVHPQVLVIVDPVMGDDDHGLYVTEGLAEASRECLVPQAHGLTPNSFELGLLTGCEVGRVDQAVAAARRLLAQGLRWVVVTS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SHIB3 (Pyridoxine kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17
Identity = 58/179 (32.40%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+ ++ L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQEHDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SHISS (Pyridoxine kinase OS=Shigella sonnei (strain Ss046) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
The following BLAST results are available for this feature:
BLAST of CB290274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PDXY_ECOLI1.070e-2234.27Pyridoxamine kinase OS=Escherichia coli (strain K1... [more]
PDXY_ECOUT1.397e-2234.27Pyridoxamine kinase OS=Escherichia coli (strain UT... [more]
PDXY_ECOL51.397e-2234.27Pyridoxamine kinase OS=Escherichia coli O6:K15:H31... [more]
PDXY_ECO571.397e-2234.27Pyridoxamine kinase OS=Escherichia coli O157:H7 GN... [more]
PDXY_ECOL62.383e-2234.27Pyridoxamine kinase OS=Escherichia coli O6 GN=pdxY... [more]
PDXY_SHIFL4.065e-2233.71Pyridoxamine kinase OS=Shigella flexneri GN=pdxY P... [more]
PDXY_SHIDS4.065e-2233.71Pyridoxamine kinase OS=Shigella dysenteriae seroty... [more]
PDXK_BORA15.494e-1935.20Pyridoxine kinase OS=Bordetella avium (strain 197N... [more]
PDXK_SHIB36.715e-1732.40Pyridoxine kinase OS=Shigella boydii serotype 18 (... [more]
PDXK_SHISS8.771e-1732.40Pyridoxine kinase OS=Shigella sonnei (strain Ss046... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290274 ID=CB290274; Name=CB290274; organism=Citrus sinensis; type=EST; length=744bp
GCCCTTAGGAGTTGCCGTCCTTGTTTGGGCACTTCCCGAAACCTCACGTT
TTCCGGCTTGATAGCAGCTTCCGATTGGATTTGTAGGAGGAGAAGCTCGA
GCATATCAGGAATGGCGCCTCCGATTCTCTCATTGGCTTTACCTTCGGAG
ACTGGTCGAGTTTTGAGCATACAGTCGCATACTGTTCAGGGGTATGTTGG
AAATAAATCAGCTGTCTTTCCTCTCCAACTACTGGGCTATGACGTGGATC
CAATCCATTCAGTACAGTTCTCAAACCACACAGGATACCCAACTTTCAAG
GGCCAAGTTTTGAATGGACAACAATTATGCGACTTAATAGAAGGACTGGA
AGCCAATAATCTATTGTACTATACTCATTTATTAACAGGTTATATTGGTT
CTGTTTCTTTTCTGAACACGATACTGCAAGTTGTTGAAAAGCTTCGCTCT
ATAAACCCAAATCTGATATACGTTTGTGATCCAGTGATGGGTGACGAGGG
AAAGCTCTATGTTCCTTCCGAGCTAGTATCAGTATACCGTGAGAAGGTTG
TTCCAGTGGCCTCAATGTTGACCCCTAATCAGTTTGAAGCAGAACAGTTG
ACTGGTTTCAGGATTGGGAGTGAAGCAGATGGGAGGGAAGCTTGTAAGAT
TCTTCATGCTGCTGGACCTGCAAAGGTTGTGATCACAAGCATAAATATAG
ATGGCAATCTTTTCCTGATTGGCAGTCATCAGAAGGAAAAGGGT
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