CB290274

Overview
NameCB290274
Unique NameCB290274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2896 contig Csv1_Contig2896:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_SHIDS (Pyridoxine kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ESCF3 (Pyridoxine kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECOSE (Pyridoxine kinase OS=Escherichia coli (strain SE11) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECOLU (Pyridoxine kinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO8A (Pyridoxine kinase OS=Escherichia coli O8 (strain IAI1) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO7I (Pyridoxine kinase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO5E (Pyridoxine kinase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO57 (Pyridoxine kinase OS=Escherichia coli O157:H7 GN=pdxK PE=3 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO27 (Pyridoxine kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
BLAST of CB290274 vs. ExPASy Swiss-Prot
Match: PDXK_ECO24 (Pyridoxine kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=pdxK PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  160 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 690
            ++++QS  V G VGN  AV  ++  G +V  + +V  SN   Y TF G  +  +     +  L+  + L     +T GY+G+ S +  + + +  LR  +P+L+ + DPV+GD +  +YV  +L   YR+ ++P+A  +TPN FE E LTG           A K L +     VVITS
Sbjct:   18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITS 196          
The following BLAST results are available for this feature:
BLAST of CB290274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PDXK_SHIDS8.771e-1732.40Pyridoxine kinase OS=Shigella dysenteriae serotype... [more]
PDXK_ESCF38.771e-1732.40Pyridoxine kinase OS=Escherichia fergusonii (strai... [more]
PDXK_ECOSE8.771e-1732.40Pyridoxine kinase OS=Escherichia coli (strain SE11... [more]
PDXK_ECOLU8.771e-1732.40Pyridoxine kinase OS=Escherichia coli O17:K52:H18 ... [more]
PDXK_ECO8A8.771e-1732.40Pyridoxine kinase OS=Escherichia coli O8 (strain I... [more]
PDXK_ECO7I8.771e-1732.40Pyridoxine kinase OS=Escherichia coli O7:K1 (strai... [more]
PDXK_ECO5E8.771e-1732.40Pyridoxine kinase OS=Escherichia coli O157:H7 (str... [more]
PDXK_ECO578.771e-1732.40Pyridoxine kinase OS=Escherichia coli O157:H7 GN=p... [more]
PDXK_ECO278.771e-1732.40Pyridoxine kinase OS=Escherichia coli O127:H6 (str... [more]
PDXK_ECO248.771e-1732.40Pyridoxine kinase OS=Escherichia coli O139:H28 (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290274 ID=CB290274; Name=CB290274; organism=Citrus sinensis; type=EST; length=744bp
GCCCTTAGGAGTTGCCGTCCTTGTTTGGGCACTTCCCGAAACCTCACGTT
TTCCGGCTTGATAGCAGCTTCCGATTGGATTTGTAGGAGGAGAAGCTCGA
GCATATCAGGAATGGCGCCTCCGATTCTCTCATTGGCTTTACCTTCGGAG
ACTGGTCGAGTTTTGAGCATACAGTCGCATACTGTTCAGGGGTATGTTGG
AAATAAATCAGCTGTCTTTCCTCTCCAACTACTGGGCTATGACGTGGATC
CAATCCATTCAGTACAGTTCTCAAACCACACAGGATACCCAACTTTCAAG
GGCCAAGTTTTGAATGGACAACAATTATGCGACTTAATAGAAGGACTGGA
AGCCAATAATCTATTGTACTATACTCATTTATTAACAGGTTATATTGGTT
CTGTTTCTTTTCTGAACACGATACTGCAAGTTGTTGAAAAGCTTCGCTCT
ATAAACCCAAATCTGATATACGTTTGTGATCCAGTGATGGGTGACGAGGG
AAAGCTCTATGTTCCTTCCGAGCTAGTATCAGTATACCGTGAGAAGGTTG
TTCCAGTGGCCTCAATGTTGACCCCTAATCAGTTTGAAGCAGAACAGTTG
ACTGGTTTCAGGATTGGGAGTGAAGCAGATGGGAGGGAAGCTTGTAAGAT
TCTTCATGCTGCTGGACCTGCAAAGGTTGTGATCACAAGCATAAATATAG
ATGGCAATCTTTTCCTGATTGGCAGTCATCAGAAGGAAAAGGGT
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