CB290276

Overview
NameCB290276
Unique NameCB290276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:827..1565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290276 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:    8 VVVSSCGHDGPSGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 292
            VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  164 VVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CB290276 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   95 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 292
            PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  227 PGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CB290276 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   11 VVSSCGHDGPSGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 292
            V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  170 VIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
The following BLAST results are available for this feature:
BLAST of CB290276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
THI4_METTP2.435e-1141.00Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALWD3.180e-1146.97Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_METVS7.084e-1138.30Putative thiazole biosynthetic enzyme OS=Methanoco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ae05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290276 ID=CB290276; Name=CB290276; organism=Citrus sinensis; type=EST; length=739bp
GCCCGTGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTCTGGGGCCA
CTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAGTGCCTGGA
ATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTGAC
CAGGGAGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGTTGCCGAGA
TTGATGGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGATGATATCG
GGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAATGC
ATTAGACGGTACATATGTGGGAGGTGTTCACCCTGAGCTGATCTTAGCTG
CAGCTGATTCTGCTGAGACTGCTGATGGTTAATTTGATAATAACAGGCAT
CATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAAAAAGTAGT
TGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATGAGATGATGT
TGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGGTCCATCATGCAACCTT
TAATTTTAATTTCTTTCTCCTCTTGTAAGAAACCGTTGTGAGTTTTTCGG
GGGTGAATTTGCAGTTGCGTATCTAGTCCTTGTTATCTGTATTATGTGTA
AGACTGCCCTTGGGCTGTTCCCTTTTCTTTGCTTTGTATGTTTATAACTT
GAGGCATCAGCCAATGGGACAGTGCTGATGTGATTAAGA
back to top