CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.768e-75
Identity = 137/192 (71.35%), Postives = 157/192 (81.77%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL-PDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF++LGNK+D+DGGNSRVVSEKKAR WCA KGNI YFETSAKE  NV+++F CI K AL +  +++IY  PDT     S   +  GC C
Sbjct:   16 DSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANERDQDIYFQPDT----GSVPEQRGGCAC 203          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.429e-74
Identity = 136/195 (69.74%), Postives = 159/195 (81.54%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ I +NALK   E E+Y     P  +D  + ++P + GC C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVRNALKQETEVELYNEFPEPIKLDKNDRTKPSAEGCSC 207          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 8.214e-73
Identity = 135/193 (69.95%), Postives = 159/193 (82.38%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESC 205          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.214e-73
Identity = 135/195 (69.23%), Postives = 158/195 (81.03%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y     P  +D  + ++  +  C C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPKPIKLDKNDRAKASAESCSC 207          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 8.214e-73
Identity = 135/193 (69.95%), Postives = 159/193 (82.38%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESC 205          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.214e-73
Identity = 135/193 (69.95%), Postives = 159/193 (82.38%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESC 205          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.214e-73
Identity = 135/193 (69.95%), Postives = 159/193 (82.38%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSAESC 205          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.004e-70
Identity = 133/191 (69.63%), Postives = 152/191 (79.58%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFS  YKATIGADFLT+EV  +DR  T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDVN+ KSFD L++WR+EFLIQASP DPDNFPFVVLGNKID++  + RV+S K+A  +C SKGNIPYFETSAKE INVE+AF+ IA+NAL   E EE        +    +    GC C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDME-ESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIENDRDGCAC 205          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.922e-70
Identity = 133/195 (68.21%), Postives = 155/195 (79.49%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 854
            DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSL VAFYRGADCCVLV+DV +  +F  L++WR EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AW  SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y     P  +D  + ++  +  C C
Sbjct:   16 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSAESCSC 207          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.023e-67
Identity = 121/191 (63.35%), Postives = 156/191 (81.68%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 854
            +SGVGKTS+MNQYVN+KFS  YKATIGADFLTKEV  +D++ TLQ+WDTAGQERFQSLGVAFYRGADCCVLVYDVN+ KSF+ L++WR+EFLIQASPS+P+ FPF++LGNK+DV+    R+VS+ KA A+C ++G IPYFETSAKE INV+EAF+ +AK AL++ + ++I    T  +    + + + C C
Sbjct:   16 ESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVE-EQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDMESQKTSCYC 205          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_ARATH1.768e-7571.35Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB7A_BOVIN7.429e-7469.74Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RAB7A_RAT8.214e-7369.95Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB8.214e-7369.23Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE8.214e-7369.95Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN8.214e-7369.95Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA8.214e-7369.95Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7_NEUCR1.004e-7069.63Probable Ras-related protein Rab7 OS=Neurospora cr... [more]
RAB7A_RABIT2.922e-7068.21Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
YPT7_SCHPO3.023e-6763.35GTP-binding protein ypt7 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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