CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.349e-56
Identity = 111/194 (57.22%), Postives = 145/194 (74.74%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGN-SSQPRSSGCEC 854
            DSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+ FPFV+LGNKID +  + ++VSEK A+    S G+IP F TSAK  INV+ AF+ IA++AL+  + + E +  D  D  N      ++ C C
Sbjct:   16 DSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQADTEAFEDDYNDAINIRLDGENNSCSC 208          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT71_SCHPO (GTP-binding protein ypt71 OS=Schizosaccharomyces pombe GN=ypt71 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.485e-53
Identity = 107/195 (54.87%), Postives = 143/195 (73.33%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQP--RSSGCEC 854
            DSGVGKT LMNQ+VN+KFS +YKATIGADFLTK+V  +D+L TLQ+WDTAGQERFQSLG+AFYRGADCCV+VY+VN+ KSFD++ NWR+EFL Q S  D   FPF+++GN+ID D  + R VS  +A  +C SK   N+ +FE SAKE  NV + F+ +++ AL++    + ++ D  +    S+P   +S C C
Sbjct:   16 DSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPFIIVGNQIDKD-ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALENESSRDDFVNDFSEPLLLSKPLNNTSSCNC 208          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.276e-49
Identity = 97/190 (51.05%), Postives = 129/190 (67.89%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DPD+FPFVVLGNK+D +    R V+ ++A+AWC   GN PY ETSAK+  NV  AF+   +  L   E+ E   L  TID+ + S+  SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKE---DRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKASSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.843e-48
Identity = 95/190 (50.00%), Postives = 129/190 (67.89%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVVLGNK+D +    R V+ ++A+AWC   G+ PY ETSAK+  NV  AF+   +  L   E+ E   L  TID+ + S+  SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE---DRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKAGSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.407e-48
Identity = 90/190 (47.37%), Postives = 129/190 (67.89%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  + +   DT+++    +P SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVNLHRKPKPSSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.143e-48
Identity = 90/190 (47.37%), Postives = 128/190 (67.37%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  + +   DT+ +    +P SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVSLHRKPKPSSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.105e-48
Identity = 90/190 (47.37%), Postives = 128/190 (67.37%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  E +   DT+++    +P SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQTDTVNLHRKPKPNSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.361e-48
Identity = 94/190 (49.47%), Postives = 128/190 (67.37%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP++FPFVVLGNK+D +    R V+ ++A+ WC   G+ PY ETSAK+  NV  AF+   +  L   E+ E   L  TID+ + S+  SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKAGSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.145e-48
Identity = 89/190 (46.84%), Postives = 128/190 (67.37%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 854
            D GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P++FPFV+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  + +   DT+++    +P SS C
Sbjct:   15 DGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSDHLIQTDTVNLHRKPKPNSSCC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.166e-40
Identity = 87/188 (46.28%), Postives = 119/188 (63.30%), Query Frame = -2
Query:  288 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 848
            GVGKTSL+++YV+K F   Y+ T+GA  L+K +  ED    LQIWDT GQERF+S+   FY+G+D CVL +DV  ++SF+ L  WR + L +  P +   +P VVLGNKID++    R V ++ A+ WC  K +IPYFE SAK  INV +AF+ +A  AL       E YL D+I +    QP+S  C
Sbjct:   18 GVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPME-QPYPMVVLGNKIDLE---DRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLASRALSRYRSILESYLTDSIKLSPEDQPKSRCC 200          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT7_YEAST5.349e-5657.22GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
YPT71_SCHPO2.485e-5354.87GTP-binding protein ypt71 OS=Schizosaccharomyces p... [more]
RAB9B_MOUSE1.276e-4951.05Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_PONAB1.843e-4850.00Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9A_HUMAN2.407e-4847.37Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA3.143e-4847.37Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9A_MOUSE4.105e-4847.37Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN5.361e-4849.47Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB9A_RAT9.145e-4846.84Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB7B_BOVIN9.166e-4046.28Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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