CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.121e-37
Identity = 84/188 (44.68%), Postives = 123/188 (65.43%), Query Frame = -2
Query:  288 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA-LKSGEEEEIYLPDTIDVGNSSQPRSSGC 848
            GVGKTSL++QYV+K F  +Y+ T+GA  L+K +  +D    LQIWDT GQERF+S+   FY+G+D C+L +DV   +SF+ L+ WR++ L +  P +  ++P VVLGNKID++    R VS++    WC  K ++PYFE SAK  INV +AF+ +A  A L+     E +L D+I + +  QP+S  C
Sbjct:   18 GVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPME-QSYPMVVLGNKIDLE---DRKVSQEVVHGWCKEK-DMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKL-SPGQPKSRCC 199          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.463e-37
Identity = 82/191 (42.93%), Postives = 119/191 (62.30%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            +  VGKTS++ +YV+K+F    K TIG DF    V   + + TLQ+WDT+GQERF+SL +++YRGAD C+LV+DV + K+  +L  WR++F+ +    DP  FPF++LGNKID     +RVV+EK A  WC     GN+ YF+TSAK+ IN+E+ F+ I+       +  EI     I +      +SS C
Sbjct:   15 EKSVGKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKID---DPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQCENQPQSNEIPPEQLISLTEKKSNQSSCC 197          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.708e-36
Identity = 83/188 (44.15%), Postives = 121/188 (64.36%), Query Frame = -2
Query:  288 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 848
            GVGKTSL++QYV+K F  +Y+ T+GA  L+K +   D    LQIWDT GQERF+S+   FY+G+D C+L +DV  ++SF+ L+ WR + L +  P +  ++P V+LGNKID+     R V ++ A+ WC  K +IPYFE SAK  INV +AF+ +A  AL   +   E +L ++I + +  Q RS  C
Sbjct:   18 GVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME-QSYPMVLLGNKIDL---ADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHLTESIKL-SPDQSRSRCC 199          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 6.584e-30
Identity = 80/208 (38.46%), Postives = 120/208 (57.69%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNS-----SQPRSSGCEC 854
            DSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +K  E+  E+  +PDT++ GNS      +P    C C
Sbjct:   17 DSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 218          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 8.599e-30
Identity = 81/208 (38.94%), Postives = 119/208 (57.21%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNS-----SQPRSSGCEC 854
            DSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE+A + +    +K  E+  E+  +PDT++ GNS      +P    C C
Sbjct:   17 DSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.123e-29
Identity = 76/188 (40.43%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  294 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSS 854
            DSGVGKT L+ ++    F++ Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V  ++A    A +  I +FETSAK  +NV+EAF  +A++  LK+G             GNSS+P S+
Sbjct:   16 DSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQREQAER-LAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRS---------GNSSKPSST 187          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.123e-29
Identity = 76/188 (40.43%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  294 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSS 854
            DSGVGKT L+ ++    F+N Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    +V+ E+  +   A +  I +FETSAK  +NV+EAF  +A++  LKSG             GN S+P S+
Sbjct:   16 DSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDME-AKRKVLKEQADK--LAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRS---------GNHSKPSST 187          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.916e-29
Identity = 71/168 (42.26%), Postives = 106/168 (63.10%), Query Frame = -2
Query:  351 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 854
            DSGVGK+ L+ ++ +  F++ +  TIG DF  K+V  + +L  LQIWDTAGQERF+++  A+YRGA   +LVYD+    SF+N+ NW       AS    DN   +++GNK+D+   + RVVS  + +A  A +    ++ETSAK+ ++VEEAF  +AK+ L   E E
Sbjct:   21 DSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHAS----DNVNKILVGNKLDL-AEDKRVVSIARGQA-LADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGE 182          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.268e-29
Identity = 76/188 (40.43%), Postives = 109/188 (57.98%), Query Frame = -2
Query:  294 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSS 854
            DSGVGKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V +++A       G I +FETSAK  +NV+EAF  +A++  LKSG             GN ++P S+
Sbjct:   16 DSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKSGGRRS---------GNGNKPPST 187          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.268e-29
Identity = 75/189 (39.68%), Postives = 110/189 (58.20%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT L+ ++    F++ Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V  ++A    A +  I +FETSAK  +NV+EAF  +A++  LK+G             G +S+P S+G
Sbjct:   16 DSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRQVQREQAEK-LAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRS---------GTNSKPSSTG 188          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7B_MOUSE1.121e-3744.68Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB7B_DICDI1.463e-3742.93Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB7B_HUMAN4.708e-3644.15Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RB27B_MOUSE6.584e-3038.46Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RB27B_HUMAN8.599e-3038.94Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RAB13_RAT1.123e-2940.43Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MESAU1.123e-2940.43Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
YPTV2_VOLCA1.916e-2942.26GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB13_HUMAN3.268e-2940.43Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_MOUSE4.268e-2939.68Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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