CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.574e-29
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = -2
Query:  360 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSG 854
            DSGVGKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS         ++LGNK D++    R V +++A       G I +FETSAK  +NV+EAF  +A++  LKSG
Sbjct:   16 DSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA----GVERLLLGNKCDMEA--KRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKSG 174          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 7.280e-29
Identity = 78/194 (40.21%), Postives = 118/194 (60.82%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNSS 854
            DSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K +IPYFETSA  G NVE+A + +    +K  E+  E+ ++PDT++ G+SS
Sbjct:   17 DSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADLP--DQREVNERQARD-LAEKYSIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTHIPDTVN-GSSS 203          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27B_RAT (Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.622e-28
Identity = 79/208 (37.98%), Postives = 119/208 (57.21%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNS-----SQPRSSGCEC 854
            DSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD    V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +K  E+  E+  +PDT++  NS      +P    C C
Sbjct:   17 DSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLIGNKADL--LDQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGVNSGKVDGEKPAEKKCAC 218          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.719e-28
Identity = 68/157 (43.31%), Postives = 99/157 (63.06%), Query Frame = -2
Query:  384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854
            DSGVGK+++++++    FS   K+TIG +F TK +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFDN++ W  E    A  S       +++GNK D+   + R VSE + +A  A K  + + ETSA E +NVEEAFQ I
Sbjct:   20 DSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSS----IVIMMVGNKSDLI--HLRAVSEDEGKA-LAEKEGLFFLETSAMEAVNVEEAFQTI 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.719e-28
Identity = 67/166 (40.36%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  357 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 854
            DS VGK++L+ Q+V+K+F+     TIG +F ++ +   D+   LQIWDTAGQE+F+S+  A+YRGA C ++VYD+    SF++LN+W    L         +   V++GNK D++   +R VS  +A+ + A K  + +FETSAK  +NV+EAF+   +  LK  E
Sbjct:   32 DSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSW----LTDCRKFSSCDVTTVLIGNKADLEA--NRQVSTSEAKEF-AEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLE 190          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.373e-27
Identity = 72/192 (37.50%), Postives = 110/192 (57.29%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGK+ L+ ++ +  +   Y +TIG DF  + V+ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    +N   +++GNK D+    +RVVS +  +A  A +  IP+ ETSAK+  NVE+AF  +A   KN + S        P T+ +      + S C
Sbjct:   16 DSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDL--AENRVVSYEAGKA-LADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSC 200          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.373e-27
Identity = 74/199 (37.19%), Postives = 112/199 (56.28%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA-----KNALKSGEEE---EIYLPDTIDVGNSSQPRSSGCEC 854
            D  VGKTS++ +++  KF N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   V+VYDV S +SF N   W +E   +       +   V++GNK D+       + E +A+   A + N+ + ETSAK G N++  F+ IA        L S ++E   ++ L  +    + +Q +S GC C
Sbjct:   17 DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERG----SDVIVVLVGNKTDLVDKRQVSIEEAEAK---ARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSNANASLAQQQSGGCSC 208          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.373e-27
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW       AS    DN   +++GNK D+D  + R V   K +A  A +  I +FETSAK  +NVEE F  I ++   +  + +    P TI +  + Q   +G
Sbjct:   23 DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAG 205          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.793e-27
Identity = 74/200 (37.00%), Postives = 116/200 (58.00%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ--------CIAKNALKSGEEEEIYLP---DTIDVGNSSQPRSSGC 854
            DSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK D+   + R VSE+  +A  A K  + + ETSA E +N+E+AFQ         I+K AL + +E    LP    TI+V ++S  +   C
Sbjct:   20 DSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLK--HLRAVSEEDGQA-LAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKAL-AAQEASSNLPGQGTTINVADASANQRRSC 211          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.793e-27
Identity = 69/189 (36.51%), Postives = 112/189 (59.26%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL-KSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGK+ L+ ++ +  +++ + +TIG DF  K +  + +   LQIWDTAGQERF+++  ++YRGA   +LVYD     SF N+  W  E    A     +N   +++GNK D+   N +VV   +A+++  S G IP+ ETSAK   NVEE F  +A++   +  + +E   PD +D+ + ++ +S G
Sbjct:   18 DSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYAC----ENVNKLLVGNKTDL--VNEKVVDSNQAKSFAESYG-IPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNKTKSGG 199          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_BOVIN5.574e-2943.37Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RB27B_BOVIN7.280e-2940.21Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RB27B_RAT1.622e-2837.98Ras-related protein Rab-27B OS=Rattus norvegicus G... [more]
RGP2_ORYSJ4.719e-2843.31Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAB2B_DICDI4.719e-2840.36Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RIC1_ORYSJ1.373e-2737.50Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RBH1B_ARATH1.373e-2737.19Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
ARA3_ARATH1.373e-2738.10Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB2BV_BETVU1.793e-2737.00Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB1D_DICDI1.793e-2736.51Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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