CB290279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.059e-27 Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = -2 Query: 375 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN 854 DSGVGK+ L+ ++ + F+ + TIG DF + ++ + + LQIWDTAGQERF+++ A+YRGA +LVYDV SF+N+ NW AS DN +++GNK D+D + R V K +A A + I +FETSAK +NVEE F IA++ Sbjct: 23 DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMD-ESKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIARD 176
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.995e-27 Identity = 73/192 (38.02%), Postives = 105/192 (54.69%), Query Frame = -2 Query: 288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD---TIDVGNSSQPRSSGC 854 +S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQER+ SL +YRGA ++VYD+ + +F NW +E QASP N + GNK D+ R V + A+ + A ++ + ETSAK +NV E F IAK K+ + P +D+ SSQP S C Sbjct: 29 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASP----NIVIALAGNKADL--ATKRAVDFQDAQTY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQC 213
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 68/167 (40.72%), Postives = 105/167 (62.87%), Query Frame = -2 Query: 363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKS 854 DSGVGK+ L+ ++ + ++ Y +TIG DF + V+ + ++ LQIWDTAGQERF+++ ++YRGA ++VYDV +SF+N+ W E AS +N +++GNK D+ G +VV + A+A+ A + IP+ ETSAK NVE+AF +A KN + S Sbjct: 16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYAS----ENVNKLLVGNKSDLTG--KKVVDYQAAKAF-ADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMAS 175
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 66/164 (40.24%), Postives = 101/164 (61.59%), Query Frame = -2 Query: 363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 854 DS VGK+ + ++ + + + Y +TIG DF + V+ E + LQIWDTAGQERF+++ ++YRGA ++VYD+ M+SF+N+ W +E A+ D+ +++GNK D+ +R V A+A+ G IP+ ETSAKE INVEEAF ++ KS Sbjct: 16 DSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYAN----DSVRKLLVGNKCDL--AENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKS 172
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 62/157 (39.49%), Postives = 102/157 (64.97%), Query Frame = -2 Query: 384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854 DSGVGK++L+ ++ +F+ + K+TIG +F T+ + +++ QIWDTAGQER++++ A+YRGA ++VYD+ SFDN+ W +E A N +++GNK D+ + R VS ++A+A+ A++ N+ + ETSA + NVEEAFQ + Sbjct: 18 DSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL--LHLRAVSTEEAQAF-AAENNLSFIETSAMDASNVEEAFQTV 167
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 76/211 (36.02%), Postives = 117/211 (55.45%), Query Frame = -2 Query: 282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGN--------SSQPRSSGCEC 854 DSGVGKTS++ QY + KF++++ T+G DF K V + + LQ+WDTAGQERF+SL AF+R A +L++D+ + +SF N+ NW + + A +PD V+ GNK D++ + RVV E++A A A K IPYFETSA G N+ +A + + +K E ++ ++P+ + N S + C C Sbjct: 17 DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEEAIA-LAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 72/188 (38.30%), Postives = 111/188 (59.04%), Query Frame = -2 Query: 327 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTI 854 DSGVGKTS++ QY + KF++++ T+G DF K V + + LQ+WDTAGQERF+SL AF+R A +L++D+ + +SF N+ NW + + A +PD V+ GNK D++ + RVV E+ AR A K IPYFETSA G N+ +A + + +K E ++ ++P+ + Sbjct: 17 DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEDARG-LAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGV 198
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = -2 Query: 369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854 DSGVGKT L+ ++ F+ + +TIG DF + ++ + + LQIWDTAGQERF+++ A+YRGA +LVYD+ + KSFDN+ NW AS SD + ++LGNK D++ + R VS+++ G I + ETSAK NVEEAF +A++ + Sbjct: 16 DSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSTNVEEAFFTLARDIM 170
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = -2 Query: 369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854 DSGVGKT L+ ++ F+ + +TIG DF + ++ + + LQIWDTAGQERF+++ A+YRGA +LVYD+ + KSFDN+ NW AS SD + ++LGNK D++ + R VS+++ G I + ETSAK NVEEAF +A++ + Sbjct: 16 DSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSTNVEEAFFTLARDIM 170
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27 Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = -2 Query: 369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854 DSGVGKT L+ ++ F+ + +TIG DF + ++ + + LQIWDTAGQERF+++ A+YRGA +LVYD+ + KSFDN+ NW AS SD + ++LGNK D++ + R VS+++ G I + ETSAK NVEEAF +A++ + Sbjct: 16 DSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSTNVEEAFFTLARDIM 170 The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bpback to top |