CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = -2
Query:  369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854
            DSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ETSAK   NVEEAF  +A++ +
Sbjct:   16 DSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSANVEEAFFTLARDIM 170          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 74/188 (39.36%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  S G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSSHG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 74/188 (39.36%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  S G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSSHG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 72/194 (37.11%), Postives = 111/194 (57.22%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK-----SGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGK+ L+ ++    F+  +  TIG DF  + ++ E +   LQIWDTAGQERF+++  A+YRGA   +LVYDV   KSF N+ NW       A+    D+   +++GNK D+     +VV   + ++  A +  I + ETSAK  INVEEAF  +AK+  K       E+ ++  P T ++G ++  + + C
Sbjct:   23 DSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHAT----DSVNKMLIGNKCDM--AEKKVVDSSRGKS-LADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNEQPQVVQPGT-NLGANNNKKKACC 208          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 73/188 (38.83%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFYTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT----IDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK  L   E +   +  T    +D+   +QP  S C
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKK-LPKNEPQNPGINCTRGRGVDLTEPTQPTRSQC 212          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.217e-27
Identity = 74/193 (38.34%), Postives = 108/193 (55.96%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT----IDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK  L   E +      T    +D+   +QP  S C
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKK-LPKNEPQNPGANSTRGRGVDLTEPTQPTRSQC 212          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.814e-27
Identity = 69/192 (35.94%), Postives = 111/192 (57.81%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGK+ L+ ++ +  + + Y +TIG DF  + V+ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    DN   +++GNK D+    ++VV+ + A+A+    G IP+ ETSAK   NV++AF  +A   K+ + S        P T+ +      + + C
Sbjct:   16 DSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKSDLTA--NKVVATETAKAFADEMG-IPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSC 200          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.814e-27
Identity = 65/158 (41.14%), Postives = 97/158 (61.39%), Query Frame = -2
Query:  381 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 854
            DSGVGK+ L+ ++   +F+  +  TIG DF  + +   ++   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   KSF+N+ NW +     A+    +    +++GNK D+D    RVVS ++ +A  A K  IP+ E S+K  INVEE F  +A
Sbjct:   19 DSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYAN----EGVELILVGNKCDLD--EKRVVSTEQGQA-LADKFGIPFLEASSKTNINVEECFYSVA 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.814e-27
Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = -2
Query:  369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854
            DSGVGKT L+ ++    F+  + +TIG DF  + V+ + +   LQIWDTAGQERF+++  A+YRGA   + VYD+ + KSFDN+ NW       AS SD +    ++LGNK D++    R VS+++        G I + ETSAK  INVEEAF  +A++ +
Sbjct:   16 DSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--EKRQVSKERGEKLAIDYG-IKFLETSAKSSINVEEAFITLARDIM 170          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN5.217e-2741.98Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_RAT5.217e-2739.36Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE5.217e-2739.36Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_DICDI5.217e-2737.11Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8A_BOVIN5.217e-2738.83Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB5A_PIG5.217e-2738.34Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_BOVIN5.217e-2738.34Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
YPTM2_MAIZE6.814e-2735.94GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RYL1_YARLI6.814e-2741.14Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8_DISOM6.814e-2742.59Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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