CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  327 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTI 854
            DSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + RVV E++AR   A K  IPYFETSA  G NV  A + +    +K  E   ++ ++P+ +
Sbjct:   17 DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRVVKEEEARG-LAEKYGIPYFETSAANGTNVSLAIETLLDLIMKRMERCVDKSWIPEGV 198          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 73/188 (38.83%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 73/188 (38.83%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 73/188 (38.83%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 71/182 (39.01%), Postives = 112/182 (61.54%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 854
            DSGVGKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++LGNK D+D  + RVV + K     A +  I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:   17 DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 71/182 (39.01%), Postives = 112/182 (61.54%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 854
            DSGVGKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++LGNK D+D  + RVV + K     A +  I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:   17 DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.899e-27
Identity = 71/182 (39.01%), Postives = 112/182 (61.54%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 854
            DSGVGKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++LGNK D+D  + RVV + K     A +  I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:   17 DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 71/188 (37.77%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  327 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTI 854
            DSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + R V E++AR   A K  IPYFETSA  G N+ +A + +    +K  E   ++ ++P+ +
Sbjct:   17 DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGV 198          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS-------KGNIPYFETSAKEGINVEEAFQCIAKNALKS 854
            D  VGKT+    +  K+F       IG DF  K +  +++   LQ+WDT GQERF+++  +++R   CC+L + V+  KSF+N++ W   + +     D  N+P V++GNKID+      V+++K A  WC +       K +IPYFETSAK  IN+ E F   A+  LK+
Sbjct:   16 DYCVGKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMW---YSLAFEKYDLLNYPVVLVGNKIDLP-QEKHVITKKMAEEWCKNQQTKLNLKFSIPYFETSAKNNININEIFYSAAELGLKN 182          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 67/162 (41.36%), Postives = 101/162 (62.35%), Query Frame = -2
Query:  369 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 854
            DSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + E SAK  +NVEEAF  +A++ +
Sbjct:   16 DSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLEASAKSSMNVEEAFFTLARDIM 170          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB27A_PIG8.899e-2738.83Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RAB8A_MACFA8.899e-2738.83Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN8.899e-2738.83Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA8.899e-2738.83Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB10_PONAB8.899e-2739.01Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE8.899e-2739.01Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN8.899e-2739.01Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RB27A_RAT1.162e-2637.77Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RABO_DICDI1.162e-2636.84Ras-related protein RabO OS=Dictyostelium discoide... [more]
RAB8B_BOVIN1.162e-2641.36Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
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