CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 72/188 (38.30%), Postives = 111/188 (59.04%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT  + ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSF+N+ NW       ASP    +   ++LGNK D +  + R VS ++     AS G I + ETSAK  IN+E AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:   16 DSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASP----DVEKMILGNKCDAN--DKRQVSREQGEKLAASFG-IKFMETSAKANINIENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  +S    S C
Sbjct:   29 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQC 213          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE---EIYLPDTIDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+  +           +D+   +QP  S C
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPAQPARSQC 212          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE---EIYLPDTIDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+  +           +D+   +QP  S C
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQC 212          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 72/192 (37.50%), Postives = 107/192 (55.73%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE---EIYLPDTIDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+  +           +D+   +QP  S C
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQC 212          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 65/164 (39.63%), Postives = 105/164 (64.02%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 854
            DSGVGK+ ++ ++ + +F++ Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD+ SM SF+++  W  +    ASPS       +++GNK D++  + R V  K A+ + A + NIP  ETSAKE   ++EAF  +A +  KS
Sbjct:   41 DSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPS----VLKLIVGNKCDLN--SKRAVDFKIAKKF-ADELNIPIMETSAKESTAIDEAFIKLASDIKKS 197          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 71/182 (39.01%), Postives = 112/182 (61.54%), Query Frame = -2
Query:  309 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 854
            DSGVGKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++LGNK D+D  + RVV + K     A +  I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:   17 DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26
Identity = 72/194 (37.11%), Postives = 115/194 (59.28%), Query Frame = -2
Query:  306 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ--------CIAKNALKSGE---EEEIYLPDTIDVGNSSQ 854
            DSGVGK++L++++   +F  + K+TIG +F T+ +Q E R    QIWDTAGQER++++  A+YRGA   +LVYDV    +F+N++ W +E    A      N   +++GNK D+   + R V+ + A+++ A K  + + ETSA E +NVE+AFQ         I+K ++ S +      I    TIDV  +S+
Sbjct:   20 DSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD----SNIVIMLIGNKTDLK--HLRAVATEDAQSY-AEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSE 206          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26
Identity = 67/203 (33.00%), Postives = 108/203 (53.20%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL------------PDTIDVGNSSQPRSSGCEC 854
            + GVGKTSL+ +++   F + Y+ATIG DFL+K +  +D+   LQ+WDTAGQERF+SL  ++ R +   ++VYD+   KSF+ ++ W E+     +    +N    ++GNK D+   + R +S ++        G   + ETS K G NV+  F+ IAK+  +    E   L            P  ID+  + +   S C+C
Sbjct:   18 EQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDV---KNERGDENVILCIVGNKSDL--SDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSESTPLDSENANSANQNKPGVIDISTAEEQEQSACQC 215          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26
Identity = 69/192 (35.94%), Postives = 110/192 (57.29%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            DSGVGK+ L+ ++ +  +   Y +TIG DF  + V+ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    DN   +++GNK D+    +R +  + A+A+ A +  IP+ ETSAK+  NVE+AF  ++   K  + S        P T+ +      + +GC
Sbjct:   16 DSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYAS----DNVNKLLVGNKSDLT--ENRAIPYETAKAF-ADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGC 200          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_CHICK1.162e-2638.30Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB5C_CANFA1.162e-2636.98Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB5A_MOUSE1.162e-2637.50Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.162e-2637.50Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_CANFA1.162e-2637.50Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB1C_DICDI1.162e-2639.63Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB10_CANFA1.162e-2639.01Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAA2A_ARATH1.162e-2637.11Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPT6_YEAST1.518e-2633.00GTP-binding protein YPT6 OS=Saccharomyces cerevisi... [more]
RBD2A_ARATH1.518e-2635.94Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
back to top