CB290279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26 Identity = 73/188 (38.83%), Postives = 114/188 (60.64%), Query Frame = -2 Query: 291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854 DSGVGKT ++ ++ F++ + +TIG DF + ++ + + LQIWDTAGQERF+++ A+YRGA +LVYD+ + KSFDN+ NW AS +D + ++LGNK DV+ + R VS+++ G I + ETSAK INVE AF +A++ +K+ ++++ GNS Q + G Sbjct: 16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKRDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26 Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = -2 Query: 288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 854 +S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQER+ SL +YRGA ++VYD+ + +F NW +E QASP N + GNK D+ + R V ++A+A+ A ++ + ETSAK +NV E F IAK K+ + P +D+ S+ S C Sbjct: 29 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQC 213
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26 Identity = 63/157 (40.13%), Postives = 100/157 (63.69%), Query Frame = -2 Query: 384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854 DSGVGK++L++++ +FS + K+TIG +F T+ +Q + + QIWDTAGQER++++ A+YRGA +LVYD+ +F+N+ W +E A N +++GNK D+ + R V + A+A+C +G + + ETSA E NVE+AFQ I Sbjct: 20 DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHAD----SNIVIMLVGNKSDLK--HLRDVQTEVAQAFCEREG-LSFIETSALESTNVEKAFQQI 169
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26 Identity = 71/188 (37.77%), Postives = 110/188 (58.51%), Query Frame = -2 Query: 327 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTI 854 DSGVGKTS++ QY + KF++++ T+G DF K V + + LQ+WDTAGQERF+SL AF+R A +L++D+ + +SF N+ NW + + A +PD V+ GNK D++ + R V E++AR A K IPYFETSA G N+ A + + +K E ++ ++P+ + Sbjct: 17 DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERCVDKSWIPEGV 198
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26 Identity = 71/203 (34.98%), Postives = 106/203 (52.22%), Query Frame = -2 Query: 288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF----LIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKNAL----KSGEEEEIYLPDTIDVGNSSQPRSSGC 854 D GKT++ N++ +KF Y D KE+ +D L WDTAGQERF SL FYR A+CCVL +D+++ +SF NL+ W E L S+ + PFV++G K D+ + +S ++ WC + + YFETSAK N++E F I+K AL + E L T+++ N++ +SS C Sbjct: 16 DYNSGKTAIFNEFAGRKFGI-YTCPSTFDLFYKEIMIDDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNLDKWITELHSKCLENGLESEKLSPPFVLIGTKSDIP-RTDKSISNERIEQWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFNIISKFALNYFNSMQKLNESKLNPTLEISNNNNIKSSSC 216
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26 Identity = 67/164 (40.85%), Postives = 98/164 (59.76%), Query Frame = -2 Query: 363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 854 +S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQER+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D+ N R V ++A+++ A ++ + ETSAK +NV E F IAK K+ Sbjct: 28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 184
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26 Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = -2 Query: 363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKS 854 DSGVGK+ L+ ++ + ++ Y +TIG DF + V+ + ++ LQIWDTAGQERF+++ ++YRGA ++VYDV +SF+N+ W E AS +N +++GNK D+ + +VV A+A+ A + IP+ ETSAK NVE+AF +A KN + S Sbjct: 16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKSDLT--SKKVVEYSVAKAF-ADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMAS 175
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26 Identity = 72/191 (37.70%), Postives = 106/191 (55.50%), Query Frame = -2 Query: 282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 854 + VGKTSL+ +++ +F N Y+ATIG DFL+K + EDR LQ+WDTAGQERF+SL ++ R + ++VYD+ + SF N W E+ + D+ V++GNK D+ + R V++++ A + I + ETSAK G NV+ F+ IA+ L E E IDV S C C Sbjct: 19 EQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLVGNKTDL--ADKRQVTQEEGEK-KAKELKIMHMETSAKAGHNVKLLFRKIAQ-MLPGMENVETQSTQMIDVSIQPNENESSCNC 201
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26 Identity = 71/188 (37.77%), Postives = 112/188 (59.57%), Query Frame = -2 Query: 291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854 DSGVGKT ++ ++ + F+ + +TIG DF K V+ + LQIWDTAGQERF ++ ++YRGA +LVYD+ + KSF+N++ W A+ ++ ++LGNK D++ + RVV + K A + I +FETSAK IN+E+AF +A++ L+ +E PD +V S+ +G Sbjct: 17 DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHAN----EDVERMLLGNKCDME--DKRVVLKSKGEQ-IAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVKE---PDRENVDISTTGGGTG 194
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26 Identity = 63/170 (37.06%), Postives = 106/170 (62.35%), Query Frame = -2 Query: 345 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 854 DSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQER++++ A+YRGA +LVYD+ +++N+ W +E A +N +++GNK D+ + R V +ARA+ A K N+ + ETSA + NVEEAF+ I + +++I Sbjct: 19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----NNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181 The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bpback to top |