CB290279

Overview
NameCB290279
Unique NameCB290279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26
Identity = 73/188 (38.83%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS +D +    ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:   16 DSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKRDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26
Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP    N    + GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  S+    S C
Sbjct:   29 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQC 213          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26
Identity = 63/157 (40.13%), Postives = 100/157 (63.69%), Query Frame = -2
Query:  384 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 854
            DSGVGK++L++++   +FS + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK D+   + R V  + A+A+C  +G + + ETSA E  NVE+AFQ I
Sbjct:   20 DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHAD----SNIVIMLVGNKSDLK--HLRDVQTEVAQAFCEREG-LSFIETSALESTNVEKAFQQI 169          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26
Identity = 71/188 (37.77%), Postives = 110/188 (58.51%), Query Frame = -2
Query:  327 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTI 854
            DSGVGKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD    V+ GNK D++  + R V E++AR   A K  IPYFETSA  G N+  A + +    +K  E   ++ ++P+ +
Sbjct:   17 DSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD---IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERCVDKSWIPEGV 198          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26
Identity = 71/203 (34.98%), Postives = 106/203 (52.22%), Query Frame = -2
Query:  288 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF----LIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS------KGNIPYFETSAKEGINVEEAFQCIAKNAL----KSGEEEEIYLPDTIDVGNSSQPRSSGC 854
            D   GKT++ N++  +KF   Y      D   KE+  +D L     WDTAGQERF SL   FYR A+CCVL +D+++ +SF NL+ W  E     L     S+  + PFV++G K D+     + +S ++   WC +         + YFETSAK   N++E F  I+K AL       +  E  L  T+++ N++  +SS C
Sbjct:   16 DYNSGKTAIFNEFAGRKFGI-YTCPSTFDLFYKEIMIDDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNLDKWITELHSKCLENGLESEKLSPPFVLIGTKSDIP-RTDKSISNERIEQWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFNIISKFALNYFNSMQKLNESKLNPTLEISNNNNIKSSSC 216          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.982e-26
Identity = 67/164 (40.85%), Postives = 98/164 (59.76%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 854
            +S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP    N    + GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+
Sbjct:   28 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 184          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26
Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = -2
Query:  363 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKS 854
            DSGVGK+ L+ ++ +  ++  Y +TIG DF  + V+ + ++  LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E    AS    +N   +++GNK D+   + +VV    A+A+ A +  IP+ ETSAK   NVE+AF  +A   KN + S
Sbjct:   16 DSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKSDLT--SKKVVEYSVAKAF-ADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMAS 175          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26
Identity = 72/191 (37.70%), Postives = 106/191 (55.50%), Query Frame = -2
Query:  282 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 854
            +  VGKTSL+ +++  +F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   ++VYD+ +  SF N   W E+   +      D+   V++GNK D+   + R V++++     A +  I + ETSAK G NV+  F+ IA+  L   E  E      IDV        S C C
Sbjct:   19 EQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLVGNKTDL--ADKRQVTQEEGEK-KAKELKIMHMETSAKAGHNVKLLFRKIAQ-MLPGMENVETQSTQMIDVSIQPNENESSCNC 201          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.589e-26
Identity = 71/188 (37.77%), Postives = 112/188 (59.57%), Query Frame = -2
Query:  291 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 854
            DSGVGKT ++ ++ +  F+  + +TIG DF  K V+   +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W       A+    ++   ++LGNK D++  + RVV + K     A +  I +FETSAK  IN+E+AF  +A++ L+    +E   PD  +V  S+    +G
Sbjct:   17 DSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHAN----EDVERMLLGNKCDME--DKRVVLKSKGEQ-IAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVKE---PDRENVDISTTGGGTG 194          
BLAST of CB290279 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26
Identity = 63/170 (37.06%), Postives = 106/170 (62.35%), Query Frame = -2
Query:  345 DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEI 854
            DSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A     +N   +++GNK D+   + R V   +ARA+ A K N+ + ETSA +  NVEEAF+ I     +   +++I
Sbjct:   19 DSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----NNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
The following BLAST results are available for this feature:
BLAST of CB290279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_PONAB1.518e-2638.83Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB5C_MOUSE1.518e-2636.98Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
YPTC6_CHLRE1.982e-2640.13Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB27A_MOUSE1.982e-2637.77Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RABN1_DICDI1.982e-2634.98Ras-related protein RabN1 OS=Dictyostelium discoid... [more]
RAB5A_HUMAN1.982e-2640.85Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
YPTC1_CHLRE2.589e-2640.12GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RYH1_SCHPO2.589e-2637.70GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RAB10_DISOM2.589e-2637.77Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RB11B_DISOM3.382e-2637.06Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ae07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ae07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290279 ID=CB290279; Name=CB290279; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTATAATCATAGAACATTAAGATTAAATCACGACCGGTCATC
AAGAAAGGAGGAAGAAAATAGCCCAGTGCAAGAACGAAACATAACACTTC
AAGCAGTAGTTACACAGAAGAACACAGACAACTAAAGGTAACTAGTAGGA
ATGAACCAATTTGTTTCACACAAACACTAATGTACAATGTAACCTTATAC
ATACCCATAAAAATGGTTAAAAAGGCCAAATCATTTGTTATACTGCTTAT
TGCTCCTTGAAAAAATTAGACCATATCTTTAGCACTCGCATCCACTTGAC
CTTGGCTGGCTGCTGTTACCAACATCAATGGTGTCCGGCAAGTATATCTC
TTCCTCCTCCCCACTCTTCAAAGCATTTTTAGCTATGCACTGGAAAGCTT
CTTCCACATTAATGCCTTCTTTTGCAGAGGTCTCAAAGTAAGGAATATTT
CCTTTGGAAGCACACCATGCTCGAGCCTTCTTCTCCGAAACCACCCTACT
GTTTCCACCATCTACATCAATCTTATTTCCTAAAACAACAAAGGGGAAAT
TGTCTGGATCCGAAGGGCTAGCCTGAATGAGGAATTCTTCTCTCCAGTTA
TTGAGGTTGTCAAAGGACTTCATAGAATTTACATCATACACAAGTACACA
GCAATCTGCACCTCGGTAGAAAGCAACACCCAGGCTTTGGAATCTTTCCT
GACCAGCTGTATCCCAGATCTGTAAGGTGAAGAGCCTATCTTCAAACTGC
ACTTCCTTTGTCAAGAAATCAGCTCCGATGGTCGCCTTGTACTGATTGCT
AAACTTCTTGTTTACATATTGATTCATCAAAGAGGTCTTGCCCACCCCGC
TGTCG
back to top