CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.522e-52
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = -1
Query:  416 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 745
            AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF E++TKIDRRSGKE+EKEPKFLKNGDAGMVKM P KPMVVETF +YPP G FAVRDMRQTVAVGVIK+V+KKDP
Sbjct:  325 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 434          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.524e-51
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = -1
Query:  416 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 745
            AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+P KPMVVETF +YPP G FAVR MRQTVAVGVIK VEKKDP
Sbjct:  325 AASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDP 434          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.042e-49
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = -1
Query:  416 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 751
            +EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF E+ TKIDRRSGKELE  PKFLKNGDAG VKMIP KPMVVETF  YPP G FAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  323 KEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.042e-49
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = -1
Query:  416 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 751
            +EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF E+ TKIDRRSGKELE  PKFLKNGDAG VKMIP KPMVVETF  YPP G FAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  323 KEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.485e-43
Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F DY P G FAVRDMRQTVAVG+IK V KKD
Sbjct:  323 KEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKD 433          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.104e-42
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = -1
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+F DYPP G FAVRDMRQTVAVGVIK VEKK
Sbjct:  336 EAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.748e-42
Identity = 82/111 (73.87%), Postives = 95/111 (85.59%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP KPM VE + DYPP G FAVRDMRQTVAVGVIK VEK D
Sbjct:  333 KEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.589e-42
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = -1
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETF DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 QAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.995e-42
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P KPM VE + DYPP G FAVRDMRQTVAVGVIK VEK D
Sbjct:  333 KESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.995e-42
Identity = 80/111 (72.07%), Postives = 95/111 (85.59%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF EL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P KPM VE + DYPP G FAVRDMRQTVAVGVIK VEK D
Sbjct:  333 KESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_ARATH8.522e-5289.09Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A1_DAUCA5.524e-5190.00Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU1.042e-4985.71Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU1.042e-4985.71Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_TRYBB2.485e-4375.68Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A0_XENLA2.104e-4277.98Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_ABSGL2.748e-4273.87Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A3_XENLA3.589e-4276.15Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A2_RHIRA7.995e-4272.07Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA7.995e-4272.07Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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