CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.182e-41
Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = -1
Query:  425 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 745
            AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP KPM VE F DYPP G FAVRDMRQTVAVGVIK V+K
Sbjct:  336 AASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.182e-41
Identity = 77/105 (73.33%), Postives = 93/105 (88.57%), Query Frame = -1
Query:  425 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 739
            +F +QVI++NHPGQ+GNGYAPVLDCHT+HIA KF EL+ KIDRR+GK +E +PKF+K+GDA +VKMIP KPM VE+F D+PP G FAVRDMRQTVAVGVIK+VEK
Sbjct:  338 SFNAQVIVLNHPGQVGNGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.768e-41
Identity = 77/111 (69.37%), Postives = 96/111 (86.49%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KF EL+ KIDRR+GK LE  PKF+K+GDA +VK++P KPM VE++ +YPP G FAVRDMRQTVAVG+IK+V+K D
Sbjct:  333 KEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.768e-41
Identity = 80/111 (72.07%), Postives = 93/111 (83.78%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EAA+F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  L  KIDRR+GK LE+ PKF+K+GDA +VKM+P K M VE F DYPP G FAVRDMRQTVAVGVIK+VEK D
Sbjct:  332 KEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.768e-41
Identity = 80/111 (72.07%), Postives = 94/111 (84.68%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            + AA+F +QVII+NHPGQI  GYAPVLDCHT+HIA KF EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE F +YPP G FAVRDMRQTVAVGVIK V+ K+
Sbjct:  335 KAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKE 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.155e-40
Identity = 78/107 (72.90%), Postives = 92/107 (85.98%), Query Frame = -1
Query:  425 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 745
            AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP KPM VE F +YPP G FAVRDMRQTVAVGVIK VEK
Sbjct:  336 AASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.155e-40
Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = -1
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPVLDCH +HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.508e-40
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = -1
Query:  425 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 745
            AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E+ PKF+K+GDA +VKM+P KPM VE F +YPP G FAVRDMRQTVAVGVIK VEK
Sbjct:  336 AASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.508e-40
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E  PKF+K+GDA +VKM+P KPM VE F DYPP G FAVRDMRQTVAVGVIK+VEK +
Sbjct:  338 SFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSE 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.508e-40
Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = -1
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA KF EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+F DYPP G FAVRDMRQTVAVGVIK V+KK
Sbjct:  336 EAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_NEUCR5.182e-4173.83Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_ASPOR5.182e-4173.33Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_SCHCO6.768e-4169.37Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_PUCGR6.768e-4172.07Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_ORYLA6.768e-4172.07Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_PODCU1.155e-4072.90Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A3_HUMAN1.155e-4075.23Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A_PODAN1.508e-4071.96Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_COCIM1.508e-4071.03Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A1_HORSE1.508e-4075.23Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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