CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.969e-40
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF ELV KIDRR+GK +E  PKF+K+GDA +VKM+P KPM VE F DYPP G FAVRDMRQTVAVGVIK+V K D
Sbjct:  336 SFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSD 442          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.572e-40
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF EL  K+DRR+GK++E  PKFLK+GDAG+V++IP KP+ VE+F DY P G FAVRDMRQTVAVGVIK+VEK D
Sbjct:  335 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.359e-40
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +F +QVI++NHPGQIG GYAPVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P KPM VE F +YPP G FAVRDMRQTVAVGVIK+VEK D
Sbjct:  338 SFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.359e-40
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF EL+ KIDRR+GK +E  PKF+K+GDA +VKM+P KPM VE F DYPP G FAVRDMRQTVAVGVIK+V K D
Sbjct:  338 SFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSD 444          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.387e-40
Identity = 77/107 (71.96%), Postives = 91/107 (85.05%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +F +QVI++NHPGQI  GY+PVLDCHT+HIA KF  LV KIDRR+GK+LE+ PKF+K+GDA +VKM+P KPM VE F DYPP G FAVRDMRQTVAVGVIK+VEK D
Sbjct:  337 SFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.387e-40
Identity = 78/107 (72.90%), Postives = 91/107 (85.05%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +FT+QVII NHPGQI  GY+PVLDCHT+HIA +F EL+ KIDRRSGK++E  PKF+K GDA +V+MIP KPM VETF +YPP G FAVRDMRQTVAVGVIK+VEK D
Sbjct:  337 SFTAQVIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.730e-40
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EAA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF  + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F DYPP G  +  DMRQTVAVGVIK+V KK+
Sbjct:  323 KEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKE 432          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.483e-40
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +FT+QVI++NHPGQI  GY+PVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P KPM VE F DYPP G FAVRDMRQTVAVGVIK+VEK D
Sbjct:  337 SFTAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLLEKIDRRTGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.483e-40
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF EL  K+DRR+GK++E  PKFLK+GDAG+V++IP KP+ VE F DY P G FAVRDMRQTVAVGVIK V K D
Sbjct:  335 KESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.774e-40
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +E   FT+QVIIMNHPGQI  GY PVLDCHT+HIA KF EL  K+DRRSGK++E  PK LK+GDAG++ +IP KP+ VETF +YPP G FAVRDMRQTVAVGVIKNV+K +
Sbjct:  335 KETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSE 445          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_AURPU1.969e-4071.96Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_CAEEL2.572e-4071.17Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_YARLI3.359e-4071.03Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_AJECG3.359e-4071.03Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_CANAL4.387e-4071.96Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_ARXAD4.387e-4072.90Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_EUGGR5.730e-4072.97Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_PICGU7.483e-4071.03Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A2_OSCTI7.483e-4069.37Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A_ONCVO9.774e-4069.37Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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