CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.407e-38
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = -1
Query:  416 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 751
            R + +F +QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K DRR+GK  E EPKF+K+GDA M+ ++P KP+ VE F D+PP G FAVRDMRQTVAVGVIK+V  KDP
Sbjct:  335 RGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKSVNFKDP 446          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.144e-38
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            + A +F + VI++NHPGQI  GY+PVLDCHT+HIA KF EL+ K DRR+GK+LE  PKFLK GDA MVK +P KPM VE F DYPP G FAVRDMRQTVAVGVIK+V K D
Sbjct:  333 KAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSD 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.144e-38
Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = -1
Query:  419 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRRSGK  E+ PKF+K+GDA +V ++P KP+ VE F ++PP G FAVRDMRQTVAVGVIK V  KD
Sbjct:  337 AADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKD 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.004e-38
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            +EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IP K + VE F +YPP G +AVRDM+QTVAVGVIK VEKKD
Sbjct:  324 KEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.195e-37
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = -1
Query:  419 ANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 742
            A+F + VI++NHPGQI  GY+PVLDCHT+HIA +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P KPM VE F +YPP G FAVRDMRQTVAVGVIK+V+K +
Sbjct:  336 ASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.195e-37
Identity = 72/111 (64.86%), Postives = 91/111 (81.98%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            + AA+F +QVI+++HPGQI  GY+PV+DCHT+HIA KF  L  ++DRRSGK LE +PKF+K GDA ++KM P KPM VE+F +YPP G FAVRDM+QTVAVGVIK VEKK+
Sbjct:  220 KAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKE 330          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.929e-37
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = -1
Query:  425 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEK 748
            EAA+F +QVII+NHPG+I  GY PVLDCHT+HIA KF EL+ KIDRRSGK +E EPK +K+GDA ++ +IP K M VE+F  YPP G FAVRDMRQTVAVGVIK V+K
Sbjct:  338 EAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.744e-37
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K DRR+GK  E EPK +K+GDA ++ ++P KP+ VE+F ++PP G FAVRDMRQTVAVGVIK+V  K+
Sbjct:  335 RGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.321e-36
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  419 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 751
            R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K DRR+GK  E+ PK +K+GDA +V + P KPM VE F ++PP G FAVRDMRQTVAVGVIK+V  KD
Sbjct:  335 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKD 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.253e-36
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = -1
Query:  419 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 745
            A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRRSGK  E  PK +K+GDA +V + P KP+ VE+F ++PP G FAVRDMRQTVAVGVIK+V  KD
Sbjct:  286 AENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKD 394          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_ARTSA2.407e-3865.18Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_ASHGO3.144e-3868.47Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A1_DROME3.144e-3866.97Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_TETPY7.004e-3868.47Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_YEAST1.195e-3767.59Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_EIMBO1.195e-3764.86Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_HYDAT5.929e-3768.52Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A2_DROME7.744e-3763.96Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_APIME1.321e-3665.77Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_RHYAM2.253e-3666.06Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
back to top