CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.253e-36
Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = -1
Query:  419 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVRDMRQTVAVGVIK V  K+
Sbjct:  337 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKE 445          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.460e-35
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = -1
Query:  419 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 739
            +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F DYPP G FAVRDM+QTVAVGVIK+V KK+
Sbjct:  323 DFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.907e-35
Identity = 65/108 (60.19%), Postives = 89/108 (82.41%), Query Frame = -1
Query:  419 ANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKD 742
            + FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF +YPP G FA+RDMRQT+AVG+I  +++K+
Sbjct:  324 SKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.249e-35
Identity = 69/104 (66.35%), Postives = 87/104 (83.65%), Query Frame = -1
Query:  431 NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELE-KEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNV 739
            +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++P KP+ VE F  +PP G FAVRDM+QTVAVGV+K V
Sbjct:  325 DFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.249e-35
Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = -1
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            +  +F S  I+MNHPG+I  GY PV+DCHT+HIA KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P KP+ VETF  Y P G FAVRDMRQTVAVGVI+ ++KK
Sbjct:  324 DTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.109e-34
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = -1
Query:  422 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 748
            EA++FT+QVII+NHPG I  GY+PV+DCHT+HI  +F EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE FFDYPP G FA RD++QTVAVGV+K+VE K
Sbjct:  339 EASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.597e-34
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = -1
Query:  416 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKE---PKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKKDP 751
            +E   F +QVI++NHPGQI  GY+PVLDCHT+HIA KF E+V K+DRR+G  + KE      LKNGDA MV++ P +PM VE+F +YPP G FAVRDMRQTVAVGVIK+  KK P
Sbjct:  323 QETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.151e-30
Identity = 59/99 (59.60%), Postives = 79/99 (79.80%), Query Frame = -1
Query:  434 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKN 730
            +QVI+MNHP  I  GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P KPM VETF DYPP G FAVRDMRQTVAVG+IK+
Sbjct:  331 AQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_BOMMO2.253e-3664.22Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_CRYPV1.460e-3563.55Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_PLAFK1.907e-3560.19Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_ENTHI4.249e-3566.35Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_EUPCR4.249e-3562.39Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A1_XENLA2.109e-3462.39Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_DICDI3.597e-3461.74Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_BLAHO3.151e-3059.60Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_SPOFR3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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