CB290296

Overview
NameCB290296
Unique NameCB290296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = -1
Query:  473 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVR 745
            AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK  E  PK +K+GDA +V ++P KP+ VE+F ++PP G FAVR
Sbjct:  323 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.943e-29
Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = -1
Query:  422 REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 751
            + A +F +QVI+MNHPG I  GY PVLD HT+H+A KF  L++K + R+GK +E+ PKFLKNG++G+V+++P KP+ VE F  Y   G F +RDM++TVAVGVI+ V  K
Sbjct:  320 KNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHK 429          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.978e-24
Identity = 51/106 (48.11%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  428 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVE 745
            A  FT+++I++ HP  + NGY PV+  HT+ +A +  ELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE + ++PP G FA+RDM +TV VG+I +V+
Sbjct:  323 ADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of CB290296 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 53/108 (49.07%), Postives = 78/108 (72.22%), Query Frame = -1
Query:  422 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFFELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPPKPMVVETFFDYPPFGCFAVRDMRQTVAVGVIKNVEKK 745
            A  FT+Q+I++ HP  +  GY PV+  HT+ +A +  EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P  G FA+RDM +TV VGV+ +V+ K
Sbjct:  323 ADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
The following BLAST results are available for this feature:
BLAST of CB290296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_HELVI3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE3.484e-2961.54Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A2_EUPCR5.943e-2953.64Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_SULSO1.978e-2448.11Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_SULTO2.584e-2449.07Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01af04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290296 ID=CB290296; Name=CB290296; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTACCAAAAAATGTTTTACCCTGTTGTCTCATTTC
TCTCATATGATCGACAAAGTTAAAAACATCAAATGGAACCATCAAAAACA
GTCCCCCTTTCTCTCAGGGCAAAATTTAATACAACACCTACAAAATATAT
GAGCCCCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATCTTGAAAC
AAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAAAAAAACT
CTGATATAAAACCAAATTCAAAAAATTAAAATGAAGTCCCGTAAAACAAA
CTAAAACACAACAAAAATAGCATAAACAAAAAAAATAAAAGCTAACTATA
GCAAATAAATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAAACTTGGT
GACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAA
CAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACAACCAAAAGGGGGG
TAGTCAAAAAAGGTTTCAACAACCATGGGCTTGGGGGGAATCATCTTAAC
CATTCCAGCATCTCCATTCTTCAAAAACTTGGGCTCCTTCTCAAGCTCCT
TGCCTGATCGCCTATCAATCTTCGTCACAAGCTCAAAAAACTTGACGGCA
ATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTG
GCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCC
T
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