CB294008

Overview
NameCB294008
Unique NameCB294008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294008_ssr1 microsatellite CB294008_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1582 contig Csv1_Contig1582:41..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 1433_TRIHA (14-3-3 protein homolog OS=Trichoderma harzianum PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.210e-89
Identity = 165/223 (73.99%), Postives = 192/223 (86.10%), Query Frame = 2
Query:   68 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            E  VYLA+LAEQAERY+EMVE MK VA  D +LTVEERNL+SV YKNVIGARRASWRI++SIEQKEE+KGN   V  IKEYRQ++E+ELAKIC+DIL V+D+HLIPS+ SGES VFY+K+KGDY+RYLAEF   D RK++AD SL+          +ELPPTHPIRLGLALNFSVFYYEILN+P++ACHLAKQAFD+AIAELD+L+EESYKDSTLIMQLLRDN
Sbjct:    4 EDAVYLAKLAEQAERYEEMVENMKIVASEDRDLTVEERNLLSVAYKNVIGARRASWRIVTSIEQKEESKGNSSQVTLIKEYRQKIENELAKICDDILEVLDQHLIPSAKSGESKVFYHKIKGDYHRYLAEFAIGDRRKDSADKSLEAYKAATEVAQTELPPTHPIRLGLALNFSVFYYEILNAPDQACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDN 226          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 1433_CANAL (14-3-3 protein homolog OS=Candida albicans GN=BMH1 PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 1.097e-88
Identity = 165/228 (72.37%), Postives = 191/228 (83.77%), Query Frame = 2
Query:   53 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            M   RE  VYLA+LAEQAERY+EMVE MK VA    EL+VEERNL+SV YKNVIGARRASWRI+SSIEQKEEAKGNE  V  I++YR ++E EL+KIC DILSV+ +HLI S+ +GES VFYYKMKGDY+RYLAEF  A+ RKEAAD SL+          +ELPPTHPIRLGLALNFSVFYYEILNSP+RACHLAKQAFD+A+A+L++L+E+SYKDSTLIMQLLRDN
Sbjct:    1 MPASREDSVYLAKLAEQAERYEEMVENMKAVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEAKGNESQVALIRDYRAKIEAELSKICEDILSVLSDHLITSAQTGESKVFYYKMKGDYHRYLAEFAIAEKRKEAADLSLEAYKAASDVAVTELPPTHPIRLGLALNFSVFYYEILNSPDRACHLAKQAFDDAVADLETLSEDSYKDSTLIMQLLRDN 228          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 14331_SOLTU (14-3-3-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.443e-88
Identity = 166/230 (72.17%), Postives = 198/230 (86.09%), Query Frame = 2
Query:   53 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVE-LTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFK-GADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            M   RE +VY+A+LAEQAERY+EMVE M+KVAK+DVE LTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE++GNE +V  IKEYR ++E EL+KIC+ ILS+++ HL+PS+++ ES VFY KMKGDY+RYLAEFK GA +RKEAA+++L           +EL PTHPIRLGLALNFSVFYYEILNSP+RAC+LAKQAFD+AIAELD+L EESYKDSTLIMQLLRDN
Sbjct:    1 MADSREENVYMAKLAEQAERYEEMVEFMEKVAKVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSSIKEYRVKIEAELSKICDGILSLLESHLVPSASTAESKVFYLKMKGDYHRYLAEFKTGARERKEAAENTLLAYKSAQDIALAELTPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDN 230          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: RAD25_SCHPO (DNA damage checkpoint protein rad25 OS=Schizosaccharomyces pombe GN=rad25 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.167e-88
Identity = 162/228 (71.05%), Postives = 193/228 (84.65%), Query Frame = 2
Query:   53 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            M   RE+ VYLA+LAEQAERY+EMVE MKKVA  + +L+VEERNL+SV YKN+IGARRASWRI+SSIEQKEE++GN +    IKEYR+++EDEL+ IC+D+LSV+++HLIP++T+GES VFYYKMKGDYYRYLAEF   +  KEAAD SL+          +ELPPT P+RLGLALNFSVFYYEIL+SPE ACHLAKQ FDEAI+ELDSL+EESYKDSTLIMQLLRDN
Sbjct:    1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDN 228          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: RAD24_SCHPO (DNA damage checkpoint protein rad24 OS=Schizosaccharomyces pombe GN=rad24 PE=1 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 7.109e-88
Identity = 164/224 (73.21%), Postives = 187/224 (83.48%), Query Frame = 2
Query:   65 REHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            RE  VYLA+LAEQAERY+ MVE MK VA  D ELTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE+KGN   V+ IKEYRQ++E EL  IC DIL+V+++HLIP++ S ES VFYYKMKGDYYRYLAEF   + R+ +AD SL+          +EL PTHPIRLGLALNFSVFYYEILNSP+RAC+LAKQAFDEAI+ELDSL+EESYKDSTLIMQLLRDN
Sbjct:    6 REDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDN 229          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 7.109e-88
Identity = 167/233 (71.67%), Postives = 195/233 (83.69%), Query Frame = 2
Query:   44 LNEMEKEREHHVYLARLAEQAERYDEMVEAMKKVAKL-DV-ELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            ++  E  RE +VY+A+LAEQAERY+EMVE M+KVAK  DV ELTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE++GNE  V  IKEYR R+E EL+KIC+ IL ++D HL+PS+T+ ES VFY KMKGDY+RYLAEFK   +RKEAA+++L           ++LP THPIRLGLALNFSVFYYEILNSP+RAC+LAKQAFDEAIAELDSL EESYKDSTLIMQLLRDN
Sbjct:    1 MSTAEATREENVYMAKLAEQAERYEEMVEFMEKVAKTADVGELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRTRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKAGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDN 233          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 1433B_HORVU (14-3-3-like protein B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.284e-88
Identity = 164/229 (71.62%), Postives = 191/229 (83.41%), Query Frame = 2
Query:   56 EKEREHHVYLARLAEQAERYDEMVEAMKKVAKL--DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            E  RE +VY+A+LAEQAERY+EMVE M+KVAK     ELTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE++GNE  V  IK+YR ++E EL KIC+ IL ++D HL+PSST+ ES VFY KMKGDYYRYLAEFK   +RK+AA++++           +ELPPTHPIRLGLALNFSVFYYEILNSP+RAC LAKQAFDEAI+ELDSL+EESYKDSTLIMQLLRDN
Sbjct:    6 ELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIEVELTKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLAEFKSGTERKDAAENTMVAYKAAQEIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACDLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDN 234          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 14336_ORYSJ (14-3-3-like protein GF14-F OS=Oryza sativa subsp. japonica GN=GF14F PE=1 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 2.068e-87
Identity = 165/233 (70.82%), Postives = 195/233 (83.69%), Query Frame = 2
Query:   44 LNEMEKEREHHVYLARLAEQAERYDEMVEAMKKVAKL-DV-ELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            ++  E  RE +VY+A+LAEQAERY+EMVE M+KVAK  DV ELTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE++GNE  V  IKEYR R+E EL+KIC+ IL ++D HL+PS+T+ ES VFY KMKGDY+RYLAEFK   +RKEAA+++L           ++LP THPIRLGLALNFSVFYYEILNSP+RAC+LAKQAFD+AIAELD+L EESYKDSTLIMQLLRDN
Sbjct:    1 MSPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKTTDVGELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDN 233          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 14335_ORYSJ (14-3-3-like protein GF14-E OS=Oryza sativa subsp. japonica GN=GF14E PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.068e-87
Identity = 163/229 (71.18%), Postives = 192/229 (83.84%), Query Frame = 2
Query:   56 EKEREHHVYLARLAEQAERYDEMVEAMKKVAKL--DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            E  RE +VY+A+LAEQAERY+EMVE M+KVAK     ELTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE++GNE     IKEYR ++E EL+KIC+ IL ++D HL+PSST+ ES VFY KMKGDYYRYLAEFK   +RK+AA++++           +ELPPTHPIRLGLALNFSVFYYEILNSP+RAC+LAKQAFDEAI+ELD+L+EESYKDSTLIMQLLRDN
Sbjct:    6 ELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 234          
BLAST of CB294008 vs. ExPASy Swiss-Prot
Match: 14332_ORYSJ (14-3-3-like protein GF14-B OS=Oryza sativa subsp. japonica GN=GF14B PE=1 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 3.528e-87
Identity = 162/231 (70.13%), Postives = 193/231 (83.55%), Query Frame = 2
Query:   50 EMEKEREHHVYLARLAEQAERYDEMVEAMKKVAKL--DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDN 736
            + E  RE +VY+A+LAEQAERY+EMVE M+KVAK     ELTVEERNL+SV YKNVIGARRASWRI+SSIEQKEE++GNE  V  IK+YR ++E EL KIC+ IL +++ HL+PSST+ ES VFY KMKGDYYRYLAEFK   +RK+AA++++           +ELPPTHPIRLGLALNFSVFYYEILNSP+RAC+LAKQAFDEAI+ELD+L+EESYKDSTLIMQLLRDN
Sbjct:    4 QAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDN 234          
The following BLAST results are available for this feature:
BLAST of CB294008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433_TRIHA2.210e-8973.9914-3-3 protein homolog OS=Trichoderma harzianum PE... [more]
1433_CANAL1.097e-8872.3714-3-3 protein homolog OS=Candida albicans GN=BMH1... [more]
14331_SOLTU2.443e-8872.1714-3-3-like protein OS=Solanum tuberosum PE=2 SV=1[more]
RAD25_SCHPO4.167e-8871.05DNA damage checkpoint protein rad25 OS=Schizosacch... [more]
RAD24_SCHPO7.109e-8873.21DNA damage checkpoint protein rad24 OS=Schizosacch... [more]
1433A_HORVU7.109e-8871.6714-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1[more]
1433B_HORVU9.284e-8871.6214-3-3-like protein B OS=Hordeum vulgare PE=2 SV=1[more]
14336_ORYSJ2.068e-8770.8214-3-3-like protein GF14-F OS=Oryza sativa subsp. ... [more]
14335_ORYSJ2.068e-8771.1814-3-3-like protein GF14-E OS=Oryza sativa subsp. ... [more]
14332_ORYSJ3.528e-8770.1314-3-3-like protein GF14-B OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294008 ID=CB294008; Name=CB294008; organism=Citrus sinensis; type=EST; length=737bp
GAGAGAGAGAAGGAAGAGAGCTAGCGAGAGAAAGAGTGAGTGACTGAACG
AAATGGAGAAGGAGAGAGAGCATCATGTTTACTTGGCCAGACTTGCTGAG
CAAGCCGAGAGATACGACGAGATGGTTGAAGCCATGAAGAAAGTTGCCAA
GTTGGATGTGGAACTGACTGTGGAGGAGAGGAATCTGGTGTCTGTTGGGT
ACAAGAATGTGATTGGGGCAAGAAGAGCATCATGGAGGATTTTGTCTTCC
ATTGAACAGAAGGAGGAGGCCAAGGGTAATGAACAAAATGTGAAGAGGAT
TAAGGAATATAGGCAGAGGGTTGAAGATGAGCTTGCAAAGATCTGTAATG
ATATATTGTCTGTCATTGATGAACACCTAATCCCATCCTCCACATCTGGA
GAATCAACCGTGTTTTACTATAAGATGAAAGGAGATTATTACCGTTACCT
AGCTGAGTTCAAAGGTGCTGATGATCGTAAGGAAGCTGCAGATCATTCAC
TTAAGGCTTACGAGGCTGCTACAGCTGCAGCAGCCTCAGAGTTACCCCCA
ACTCATCCAATCAGACTTGGCCTGGCTCTTAACTTTTCTGTTTTCTACTA
TGAGATTTTGAACTCACCTGAGAGGGCTTGCCACCTGGCTAAACAAGCAT
TTGATGAGGCGATTGCTGAACTTGATAGCCTTAATGAAGAGTCCTACAAG
GACAGCACCCTTATTATGCAGCTTCTTCGGGATAATC
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