CB294009

Overview
NameCB294009
Unique NameCB294009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294009_ssr97 microsatellite CB294009_ssr97:97..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10238 contig Csv1_Contig10238:38..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: KSG8_ARATH (Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.921e-61
Identity = 108/154 (70.13%), Postives = 134/154 (87.01%), Query Frame = 2
Query:  167 DDKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            +DK+M   VV+GS   TG +I+TT+GG++G+PKQTISYMA+RVVGTGSFG+VFQAKCLETGE VAIKKVLQD+RYKNRELQ+MR+ DHPNV+ L+H FFSTT K+EL+LNLV+EYVPE++YR  KHY+  NQ MP+I+V+LYTYQI R L Y+H
Sbjct:  101 EDKDMETTVVNGSGTETGQVITTTVGGRDGKPKQTISYMAQRVVGTGSFGVVFQAKCLETGEQVAIKKVLQDKRYKNRELQIMRLQDHPNVVRLRHSFFSTTDKDELYLNLVLEYVPETVYRASKHYTKMNQHMPIIFVQLYTYQICRALNYLH 254          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: KSGT_BRANA (Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.773e-60
Identity = 106/154 (68.83%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  167 DDKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            +DK+M   +V+G    TG +I+TT+GG++G+PKQTISYMA+RVVGTGSFG+VFQAKCLETGE VAIKKVLQD+RYKNRELQ+MR+ DHPNV+ L+H FFSTT K+EL+LNLV+E+VPE++YR LKHY+  NQ MP+I V+LYTYQI R L Y+H
Sbjct:   97 EDKDMEPPIVNGCGTETGQVITTTVGGRDGKPKQTISYMAQRVVGTGSFGVVFQAKCLETGEQVAIKKVLQDKRYKNRELQIMRLQDHPNVVRLRHSFFSTTDKDELYLNLVLEFVPETVYRALKHYTKMNQHMPIILVQLYTYQICRALNYLH 250          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.741e-54
Identity = 97/154 (62.99%), Postives = 126/154 (81.82%), Query Frame = 2
Query:  167 DDKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            D+++    ++DG+    GH+I TT+ G+NG+ +QT+SY++E VVGTGSFG+VFQAKC ETGE VAIKKVLQD+RYKNRELQ+M+++DHPN ++LKH FFS T   E++LNLV+E+VPE++ RV + YS  NQ MPLIYVKLYTYQI R LAYIH
Sbjct:   46 DERDSEPDIIDGAGAEPGHVIRTTLRGRNGQSRQTVSYISEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNAVALKHSFFSRTDNEEVYLNLVLEFVPETVNRVARSYSRTNQLMPLIYVKLYTYQICRALAYIH 199          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.970e-54
Identity = 96/154 (62.34%), Postives = 126/154 (81.82%), Query Frame = 2
Query:  167 DDKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            ++++    ++DG     GH+I+TT+ G+NG+ +QT+SY+AE VVGTGSFG+VFQAKC ETGE VAIKKVLQD+RYKNRELQ+M+++DHPNV+ LKH F+S T   E++LNLV+E+VPE++ R  + YS  NQ MPLIYVKLYTYQI RGLAY+H
Sbjct:   45 EERDSEPDIIDGVGAEPGHVITTTLPGRNGQSRQTVSYIAEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNVVCLKHSFYSRTENEEVYLNLVLEFVPETVNRTARSYSRMNQLMPLIYVKLYTYQICRGLAYLH 198          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.088e-52
Identity = 94/152 (61.84%), Postives = 121/152 (79.61%), Query Frame = 2
Query:  173 KEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            ++M   ++ G+   +G II+T   G N +  +TISY AE V+GTGSFG+VFQAKCLET E VAIKKVLQD+RYKNRELQ+MR++DHPNV+ LKH FFSTT K+EL+LNLV+EYVPE++YR  + Y+  NQ MPLIY++LYTYQI R + Y+H
Sbjct:   67 EDMDCGIIKGNGTESGRIITTKKKGLNDQKDKTISYRAEHVIGTGSFGVVFQAKCLETEEKVAIKKVLQDKRYKNRELQIMRMLDHPNVVELKHSFFSTTEKDELYLNLVLEYVPETIYRASRSYTKMNQHMPLIYIQLYTYQICRAMNYLH 218          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.438e-40
Identity = 79/146 (54.11%), Postives = 114/146 (78.08%), Query Frame = 2
Query:  197 DGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            DGS   T  +++T   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+  +K+E++LNLV++YVPE++YRV +HYS A Q +P+IYVKLY YQ+FR LAYIH+
Sbjct:   33 DGSKVTT--VVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 174          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: GSK3B_MOUSE (Glycogen synthase kinase-3 beta OS=Mus musculus GN=Gsk3b PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.438e-40
Identity = 79/146 (54.11%), Postives = 114/146 (78.08%), Query Frame = 2
Query:  197 DGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            DGS   T  +++T   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+  +K+E++LNLV++YVPE++YRV +HYS A Q +P+IYVKLY YQ+FR LAYIH+
Sbjct:   33 DGSKVTT--VVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 174          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.438e-40
Identity = 79/146 (54.11%), Postives = 114/146 (78.08%), Query Frame = 2
Query:  197 DGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            DGS   T  +++T   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+  +K+E++LNLV++YVPE++YRV +HYS A Q +P+IYVKLY YQ+FR LAYIH+
Sbjct:   33 DGSKVTT--VVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 174          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.699e-39
Identity = 78/155 (50.32%), Postives = 114/155 (73.55%), Query Frame = 2
Query:  170 DKEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            +K++ +  +     VT  + S    G + + +  ISY  ++V+G GSFG+VF AK   T E VAIKKVLQD+R+KNRELQ+MR ++HPN++ LK+ F+S+  +K+EL+LNL++EYVPE++YRV +HYS   Q++P+IYVKLY YQ+ R LAYIH+
Sbjct:    2 NKQLLSCSLKSGKQVTMVVASVATDGVDQQVE--ISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGEKKDELYLNLILEYVPETVYRVARHYSKQRQQIPMIYVKLYMYQLLRSLAYIHS 154          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.525e-39
Identity = 78/146 (53.42%), Postives = 113/146 (77.40%), Query Frame = 2
Query:  197 DGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFST-TRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            DGS   T  +++T   G+  +  Q +SY   +V+G GSFG+V+QAK  ++GE VAIKKVLQD+R+KNRELQ+MR +DH N++ L++ F+S+  +K+ ++LNLV++YVPE++YRV +HYS A Q +P+IYVKLY YQ+FR LAYIH+
Sbjct:   33 DGSKVTT--VVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 174          
The following BLAST results are available for this feature:
BLAST of CB294009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
KSG8_ARATH1.921e-6170.13Shaggy-related protein kinase theta OS=Arabidopsis... [more]
KSGT_BRANA2.773e-6068.83Shaggy-related protein kinase theta OS=Brassica na... [more]
KSG10_ARATH1.741e-5462.99Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
KSG4_ARATH2.970e-5462.34Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG2_ARATH8.088e-5261.84Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
GSK3B_RAT5.438e-4054.11Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
GSK3B_MOUSE5.438e-4054.11Glycogen synthase kinase-3 beta OS=Mus musculus GN... [more]
GSK3B_HUMAN5.438e-4054.11Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
GSK3_CAEEL2.699e-3950.32Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
GSK3B_SPECI3.525e-3953.42Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294009 ID=CB294009; Name=CB294009; organism=Citrus sinensis; type=EST; length=633bp
GCTTGGGTCCTCCTTTCTCTCATTCTCCATCGCCACACCATGATCATCAT
CTTCTCCCTCATCCACCGGTGAAATTTCTCCATTTCTCTTCCATCGCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCTCTTTCTTCACCCCAATTTCTCTCC
AAATCTCCCCATGGCCGACGATAAGGAGATGTCTGCTGCTGTTGTTGATG
GGAGTGACCATGTCACTGGTCACATCATTTCCACCACCATTGGAGGCAAA
AATGGAGAGCCAAAACAGACTATTAGCTACATGGCGGAGCGTGTTGTGGG
AACTGGGTCATTTGGTATTGTCTTCCAGGCTAAATGCTTGGAAACTGGAG
AGACTGTGGCTATCAAGAAGGTTTTGCAGGACAGAAGATATAAGAATCGT
GAACTGCAGTTAATGCGGGTGATGGATCATCCAAATGTGATTTCTTTGAA
GCATTGTTTCTTTTCAACTACCAGAAAAAACGAACTTTTCCTCAACTTGG
TTATGGAATACGTACCAGAGAGCATGTATAGGGTTTTGAAGCATTACAGC
AGTGCAAATCAGAGAATGCCCCTCATATATGTGAAACTTTATACGTACCA
GATTTTCAGGGGCCTGGCTTACATCCACACTGT
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