CB294009

Overview
NameCB294009
Unique NameCB294009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294009_ssr97 microsatellite CB294009_ssr97:97..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10238 contig Csv1_Contig10238:38..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MDS1_YEAST (Serine/threonine-protein kinase MDS1/RIM11 OS=Saccharomyces cerevisiae GN=MDS1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.656e-28
Identity = 55/119 (46.22%), Postives = 85/119 (71.43%), Query Frame = 2
Query:  272 ISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            IS+    VVG GSFG+VF     ET E VAIKKVLQD+R+KNREL++M+++ H N+I LK+ F+    ++E++LNL++EY+P+S+Y+ L+H+      M  + +K Y +Q+F+ L Y+H
Sbjct:   37 ISFPTTEVVGHGSFGVVFATVIQETNEKVAIKKVLQDKRFKNRELEIMKMLSHINIIDLKYFFYERDSQDEIYLNLILEYMPQSLYQRLRHFVHQRTPMSRLEIKYYMFQLFKSLNYLH 155          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MCK1_YEAST (Protein kinase MCK1 OS=Saccharomyces cerevisiae GN=MCK1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.850e-18
Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  290 RVVGTGSFGIVFQAKCLETGET----VAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTT-RKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            R +G G+FG V QA   +  +      AIKKV     YK+RELQ++R+ DHPN++ L++ F   + + N+++ +L ME +PE++   +  Y +    MPL +++LYTYQI RG+ Y+H
Sbjct:   39 RKIGRGAFGTVVQAYLTQDKKNWLGPFAIKKVPAHTEYKSRELQILRIADHPNIVKLQYFFTHLSPQDNKVYQHLAMECLPETLQIEINRYVTNKLEMPLKHIRLYTYQIARGMLYLH 156          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK16_ARATH (Mitogen-activated protein kinase 16 OS=Arabidopsis thaliana GN=MPK16 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.005e-14
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  E V+G GS+G+V  A    TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ RGL YIHT
Sbjct:   25 YRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFRDIYVVFELMESDLHQVIK----ANDDLTPEHYQFFLYQLLRGLKYIHT 144          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK15_ORYSJ (Mitogen-activated protein kinase 15 OS=Oryza sativa subsp. japonica GN=MPK15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.005e-14
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  E V+G GS+G+V  A    TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ RGL YIHT
Sbjct:   13 YKIEEVIGKGSYGVVCSALDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIK----ANDDLTPEHYQFFLYQLLRGLKYIHT 132          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK14_ORYSJ (Mitogen-activated protein kinase 14 OS=Oryza sativa subsp. japonica GN=MPK14 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.694e-14
Identity = 41/124 (33.06%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  E V+G GS+G+V  A    TG+ VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ RGL YIHT
Sbjct:   13 YKIEEVIGKGSYGVVCSALDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIK----ANDDLTPEHYQFFLYQLLRGLKYIHT 132          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK10_ORYSJ (Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica GN=MPK10 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  + V+G GS+G+V  A  + TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R++   + +V E +   +++V+K    AN  +   + + + YQ+ R L YIHT
Sbjct:   25 YKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIK----ANDDLTKEHYQFFLYQLLRALKYIHT 144          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK8_ARATH (Mitogen-activated protein kinase 8 OS=Arabidopsis thaliana GN=MPK8 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.948e-13
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            Y  + VVG GS+G+V  A    TGE VAIKK+      + D     RE++L+R++ HP+V+ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ RGL Y+H
Sbjct:  104 YQIQEVVGKGSYGVVASAVDSHTGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDVVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIK----ANDDLTPEHYQFFLYQLLRGLKYVH 222          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK9_ARATH (Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  + V+G GS+G+V  A    +GE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ RGL +IHT
Sbjct:   23 YQIQEVIGKGSYGVVASAIDTHSGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHVMLPPSRREFRDIYVVFELMESDLHQVIK----ANDDLTPEHYQFFLYQLLRGLKFIHT 142          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK15_ARATH (Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-13
Identity = 41/123 (33.33%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            Y  + VVG GS+G+V  A    TGE VAIKK+      + D     RE++L+R++ HP+V+ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ RGL Y+H
Sbjct:   90 YQIQEVVGKGSYGVVGSAIDTHTGERVAIKKINDVFDHISDATRILREIKLLRLLLHPDVVEIKHIMLPPSRREFRDVYVVFELMESDLHQVIK----ANDDLTPEHHQFFLYQLLRGLKYVH 208          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK9_ORYSJ (Mitogen-activated protein kinase 9 OS=Oryza sativa subsp. japonica GN=MPK9 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  + V+G GS+G+V  A  L T + VAIKKV      + D     RE++L+R++ HP+++ +KH     +R++   + +V E +   +++V+K    AN  +   + + + YQ+ R L YIHT
Sbjct:  107 YRIQEVIGKGSYGVVCSAIDLHTRQKVAIKKVHNIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIK----ANDDLTKEHYQFFLYQLLRALKYIHT 226          
The following BLAST results are available for this feature:
BLAST of CB294009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
MDS1_YEAST3.656e-2846.22Serine/threonine-protein kinase MDS1/RIM11 OS=Sacc... [more]
MCK1_YEAST5.850e-1838.98Protein kinase MCK1 OS=Saccharomyces cerevisiae GN... [more]
MPK16_ARATH3.005e-1433.87Mitogen-activated protein kinase 16 OS=Arabidopsis... [more]
MPK15_ORYSJ3.005e-1433.87Mitogen-activated protein kinase 15 OS=Oryza sativ... [more]
MPK14_ORYSJ6.694e-1433.06Mitogen-activated protein kinase 14 OS=Oryza sativ... [more]
MPK10_ORYSJ1.142e-1332.26Mitogen-activated protein kinase 10 OS=Oryza sativ... [more]
MPK8_ARATH1.948e-1333.33Mitogen-activated protein kinase 8 OS=Arabidopsis ... [more]
MPK9_ARATH5.666e-1331.45Mitogen-activated protein kinase 9 OS=Arabidopsis ... [more]
MPK15_ARATH7.401e-1333.33Mitogen-activated protein kinase 15 OS=Arabidopsis... [more]
MPK9_ORYSJ9.665e-1332.26Mitogen-activated protein kinase 9 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06bc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294009 ID=CB294009; Name=CB294009; organism=Citrus sinensis; type=EST; length=633bp
GCTTGGGTCCTCCTTTCTCTCATTCTCCATCGCCACACCATGATCATCAT
CTTCTCCCTCATCCACCGGTGAAATTTCTCCATTTCTCTTCCATCGCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCTCTTTCTTCACCCCAATTTCTCTCC
AAATCTCCCCATGGCCGACGATAAGGAGATGTCTGCTGCTGTTGTTGATG
GGAGTGACCATGTCACTGGTCACATCATTTCCACCACCATTGGAGGCAAA
AATGGAGAGCCAAAACAGACTATTAGCTACATGGCGGAGCGTGTTGTGGG
AACTGGGTCATTTGGTATTGTCTTCCAGGCTAAATGCTTGGAAACTGGAG
AGACTGTGGCTATCAAGAAGGTTTTGCAGGACAGAAGATATAAGAATCGT
GAACTGCAGTTAATGCGGGTGATGGATCATCCAAATGTGATTTCTTTGAA
GCATTGTTTCTTTTCAACTACCAGAAAAAACGAACTTTTCCTCAACTTGG
TTATGGAATACGTACCAGAGAGCATGTATAGGGTTTTGAAGCATTACAGC
AGTGCAAATCAGAGAATGCCCCTCATATATGTGAAACTTTATACGTACCA
GATTTTCAGGGGCCTGGCTTACATCCACACTGT
back to top