CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KCY_MOUSE (UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 95/184 (51.63%), Postives = 127/184 (69.02%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVF 713
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR++ +L+S+ P++  YE  GKV+KIDA+K V EVF  V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGEVVKIF 192          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KCY_RAT (UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.339e-43
Identity = 95/184 (51.63%), Postives = 127/184 (69.02%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVF 713
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR++ +L+S+ P++  YE  GKV+KIDA+K V EVF  V  +F
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGDVMKIF 192          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: UMPK_YEAST (Uridylate kinase OS=Saccharomyces cerevisiae GN=URA6 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.386e-40
Identity = 84/177 (47.46%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L R +  GR DDN+E+I KR   F ++S+PV++Y+E K KV ++   + V +V+  V+
Sbjct:   22 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 197          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_CAEEL (Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.458e-39
Identity = 87/177 (49.15%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            +GGPGSGKGTQC  IV  +G THLS+GDLLR E+KSGS  G  +  +++ G +VP EV + L+++AM    E G+  FLIDG+PR       FE+  + E + VLFFD +EE + +R+L+R Q  GR DDN +TI KRL  F+ S+ PVV YYE+KGK+ +I+A   V ++F  V A
Sbjct:   26 VGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTAIMESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQ-EAKLVLFFDVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAEGSVDDIFAVVVA 201          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_CYPCA (Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.195e-37
Identity = 84/179 (46.93%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFD-AVKAV 710
            +GGPGSGKGTQC  IVE +GYTHLS+GDLLRAE+ SGSE G  +Q ++++G++VP +  + +++ AM  +   +  +LIDG+PR  +    FE   KI  P  +L+ D   E M +R++ R Q  GR DDN ETI KRL ++ +++ PV+ YYE +G V+KI++  PV EVF   VKA+
Sbjct:   14 VGGPGSGKGTQCEKIVEKYGYTHLSSGDLLRAEVASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGYLIDGYPREVKQGEEFE--KKIGAPALLLYIDAKAETMVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIAYYETRGIVRKINSELPVDEVFAIVVKAI 190          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_RAT (Adenylate kinase isoenzyme 1 OS=Rattus norvegicus GN=Ak1 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+ +++++G++VP E  + +L+ AM  +   ++ FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R +  GR DDN ETI KRL+ + +++ PV+ +Y+ +G V+K++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSSRGKMLSSIMEKGELVPLETVLDMLRDAMLAKVDSSNGFLIDGYPREVKQGEEFERKI-AQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVISFYDKRGIVRKVNAEGSVDTVFSQV 186          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_PIG (Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 80/175 (45.71%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L R +  GR DDN ETI KRL+ + +++ PV+ +YE +G V+K++A   V +VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE--RKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 186          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_BOVIN (Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 78/174 (44.83%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R +  GR DDN ETI KRL+ + +++ PV+ +YE +G V+K++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVQQGEEFER-RIAQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDNVFSQV 186          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_RABIT (Adenylate kinase isoenzyme 1 OS=Oryctolagus cuniculus GN=AK1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +GGPGSGKGTQC  IV  +GYTHLS GDLLRAE+ SGS  G  +  ++++G++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E M++R+L R +  GR DDN ETI KRL+ + +++ PV+ +YE +G V+K++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVHKYGYTHLSTGDLLRAEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKADTSKGFLIDGYPRQVQQGEEFER-RIAQPTLLLYVDAGPETMQKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDNVFSQV 186          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_MOUSE (Adenylate kinase isoenzyme 1 OS=Mus musculus GN=Ak1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.906e-35
Identity = 78/175 (44.57%), Postives = 115/175 (65.71%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGSE G  +  ++++G++VP +  + +L+ AM  +   ++ FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L R +  GR DDN ETI KRL+ +  ++ PV+ +Y+ +G V+K++A   V  VF  V
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSERGKKLSAIMEKGELVPLDTVLDMLRDAMLAKVDSSNGFLIDGYPREVKQGEEFE--QKIGQPTLLLYVDAGAETMTQRLLKRGETSGRVDDNEETIKKRLETYYNATEPVISFYDKRGIVRKVNAEGTVDTVFSEV 186          
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCY_MOUSE7.851e-4451.63UMP-CMP kinase OS=Mus musculus GN=Cmpk1 PE=1 SV=1[more]
KCY_RAT1.339e-4351.63UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 ... [more]
UMPK_YEAST1.386e-4047.46Uridylate kinase OS=Saccharomyces cerevisiae GN=UR... [more]
KAD1_CAEEL4.458e-3949.15Probable adenylate kinase isoenzyme F38B2.4 OS=Cae... [more]
KAD1_CYPCA3.195e-3746.93Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN... [more]
KAD1_RAT4.614e-3644.25Adenylate kinase isoenzyme 1 OS=Rattus norvegicus ... [more]
KAD1_PIG4.614e-3645.71Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 ... [more]
KAD1_BOVIN7.870e-3644.83Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 ... [more]
KAD1_RABIT1.753e-3544.25Adenylate kinase isoenzyme 1 OS=Oryctolagus cunicu... [more]
KAD1_MOUSE3.906e-3544.57Adenylate kinase isoenzyme 1 OS=Mus musculus GN=Ak... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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