CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_THEEB (Adenylate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=adk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 67/181 (37.02%), Postives = 104/181 (57.46%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNR------NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            GGPGSGKGTQ A +    G  H+S GD+LRAE  +G+  G   Q+ +  G++VP +V + ++   +++      +L+DGFPRN    A FE + K    + +++LF D     ++ R LNR       Q R DD  ETI+KRL+V+ + +LP++Q Y +  K   ID  + + EV  A++A
Sbjct:    7 GGPGSGKGTQAAILTTLLGIPHISTGDILRAERAAGTLLGQQAQSYMDRGELVPDQVIVDMVANRLQQPDTAAGWLLDGFPRNGAQAAVFEEMLKSIHQDYDYLLFLDVPAAILQERALNRAKQAVNGQQRSDDTPETILKRLQVYERETLPMIQQYMSHPKFVPIDGTRTIEEVTAAIQA 187          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_NAUPA (Adenylate kinase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=adk PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 70/179 (39.11%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK----IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            +G PGSGK T    I E       H S GDLLRAE+ SGSE G  I++ I  G +VP E+ I  ++ A+E++  D  LIDGFPR+ E   A + + K    IE   V+  + SE+    R+L R +G  DDNVE    R+KVF +    +  +Y A+GK+ KI+  + + E+ D ++ V
Sbjct:    8 IGAPGSGKTTDAELIAERNSDKIVHYSTGDLLRAEVASGSELGQTIKSYIDNGNLVPLEIVINTIKSAIEKAPKDIVLIDGFPRSVEQMKALDEMLKNTDDIELVSVIEVEVSEDVARERVLGRARG-ADDNVEVFNNRMKVFTEPLKDIQDFYSAQGKLIKINGERTIEEIVDEMEQV 185          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANCP (Adenylate kinase OS=Xanthomonas campestris pv. campestris GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 65/176 (36.93%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANC8 (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=adk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 65/176 (36.93%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANCB (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=adk PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 65/176 (36.93%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV   +
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGVKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLKRI 181          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANC5 (Adenylate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=adk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/176 (36.93%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A  E + KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:    6 LGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANAC (Adenylate kinase OS=Xanthomonas axonopodis pv. citri GN=adk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 65/176 (36.93%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A  E + KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV + +
Sbjct:    6 LGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARVDGVGSLDEVLERI 181          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_STRMU (Adenylate kinase OS=Streptococcus mutans GN=adk PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 69/202 (34.16%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFD----CSEEEMERRILNRNQG--------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E GT+ ++ I +G++VP EVT  ++++ + ES   K  FL+DG+PR  E   A + +     ++ + V+  D    C  E +  RI+NR  G                    REDD  ET+ +RL V +    P+++YY  KG V  I+  + +  VF+ +  V
Sbjct:    6 MGLPGAGKGTQAAKIVEKFGLAHISTGDMFRAAMANQTEMGTLAKSFIDKGELVPDEVTNGIVKERLSESDITKKGFLLDGYPRTIEQAHALDEILSKLNLKLDGVINIDVDPACLVERLSGRIINRKTGETYHKVFNPPADYNEDDYYQREDDKPETVKRRLDVNIAQGHPIIEYYRNKGLVYDIEGNQDINLVFETIAKV 207          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANOR (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae GN=adk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 64/177 (36.16%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A    ++KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV + ++
Sbjct:    6 LGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLTRVDGVGSLDEVLERIR 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_XANOM (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=adk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 64/177 (36.16%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A    ++KI +P + V+  D + E +  RI  R   +GREDDN E++ KRL+V+  S+ PV+ +YE +GK+ ++D    + EV + ++
Sbjct:    6 LGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLTRVDGVGSLDEVLERIR 182          
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_THEEB1.488e-2637.02Adenylate kinase OS=Thermosynechococcus elongatus ... [more]
KAD_NAUPA1.943e-2639.11Adenylate kinase OS=Nautilia profundicola (strain ... [more]
KAD_XANCP9.642e-2636.93Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC89.642e-2636.93Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANCB1.645e-2536.93Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC52.805e-2536.93Adenylate kinase OS=Xanthomonas campestris pv. ves... [more]
KAD_XANAC2.805e-2536.93Adenylate kinase OS=Xanthomonas axonopodis pv. cit... [more]
KAD_STRMU2.805e-2534.16Adenylate kinase OS=Streptococcus mutans GN=adk PE... [more]
KAD_XANOR3.664e-2536.16Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_XANOM3.664e-2536.16Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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