CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_CORU7 (Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 65/173 (37.57%), Postives = 102/173 (58.96%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDA 698
            LG PG+GKGTQ   + +     H+S GDL RA I  G+E G   Q  +  GK+VP+EVT  +++  +EE+   + FL+DGFPR  E     E + K   ++ + V+ +  SE+ +  R+L+R  GR DDN  TI  RL+V+ + + P++ YY+  G++  IDA   V ++ +A
Sbjct:    6 LGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVPTEVTANMVRARLEEADAANGFLLDGFPRTIEQADLLEEMLKEKDLKLDAVINYQVSEDVVVERMLSR--GRNDDNESTIRTRLQVYREETAPLIDYYQ--GRILNIDAEGSVEDISEA 174          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_THET8 (Adenylate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=adk PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 62/180 (34.44%), Postives = 108/180 (60.00%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMERRILNRN--QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ ++L+++ + E    + + DGFPR     A  EA+ ++  E       V+  +  EEE+ RRIL R   +GR DDN ET+ +RL+V+ + + P+V YYEA+G ++++D      EV+  ++A
Sbjct:   10 LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----RVIFDGFPR---TLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRA 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_THET2 (Adenylate kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=adk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 62/180 (34.44%), Postives = 108/180 (60.00%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMERRILNRN--QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ ++L+++ + E    + + DGFPR     A  EA+ ++  E       V+  +  EEE+ RRIL R   +GR DDN ET+ +RL+V+ + + P+V YYEA+G ++++D      EV+  ++A
Sbjct:   10 LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----RVIFDGFPR---TLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRA 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PARD8 (Adenylate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=adk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 62/176 (35.23%), Postives = 99/176 (56.25%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-DGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            G PGSGKGTQ   I++ +G  H+S GD+LR E+K+ +E G + ++ I++G++VP E+ + +L   ++     K +I DGFPR      A + +      +   +L     EEE+ +R+L R +  GR DDN+ETI  RL V+   + P+  YY  +GK   I     + E+F  +K
Sbjct:    8 GAPGSGKGTQSELIIKEYGLDHISTGDVLRGEMKAETELGKIAKDYIEKGQLVPDELIVDMLANVLDSKKPAKGVIFDGFPRTIPQAKALKKMLNERGTDVSVMLNLQVEEEELIKRLLERGKVSGRSDDNLETIKSRLDVYHTQTAPLADYYVGEGKHVAIKGMGTIEEIFGRIK 183          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BACTN (Adenylate kinase OS=Bacteroides thetaiotaomicron GN=adk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 70/182 (38.46%), Postives = 105/182 (57.69%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-DGFPRNEENRAAFEAVTKIEPE------FVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVF-DAVKAV 710
            G PGSGKGTQ   IVE +G  H+S GD+LRAEIK+G+E G   +  I +G+++P E+ I +L    +   + K +I DGFPR     A  EA+ K+  E       +L  +  E+E+  R++ R  + GR DDN ETI KRL V+   + P++ +Y+ + K Q I+    +  +F D  +AV
Sbjct:    8 GAPGSGKGTQSERIVEKYGINHISTGDVLRAEIKNGTELGKTAKGYIDQGQLIPDELMIDILASVFDSFKDSKGVIFDGFPR---TIAQAEALKKMLAERGQDVSVMLDLEVPEDELMVRLIKRGKDSGRADDNEETIKKRLHVYHSQTSPLIDWYKNEKKYQHINGLGTMDGIFADICEAV 186          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_STRAW (Adenylate kinase OS=Streptomyces avermitilis GN=adk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 71/209 (33.97%), Postives = 107/209 (51.20%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRN------------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV----FDAVK 704
            +G PG+GKGTQ A + ++ G  H+S GDL RA I   +E G + ++ + EG +VP EVTI + +  ME+    + FL+DGFPRN +   A + + K E    + VL  +  E+E+ +RI  R                                 R+DD+ ET+ +RL+V+   + P++ YY A+G V  I A  PV EV     DA+K
Sbjct:    6 VGPPGAGKGTQAAFLAKNLGIPHISTGDLFRANISQQTELGKLAKSYMDEGNLVPDEVTIAMAKDRMEQPDAVNGFLLDGFPRNVKQAEALDEMLKSEGMKLDAVLDLEVPEDEVVKRIAGRRICRNDSAHVFHVSYKPPKQEGVCDVCGGELYQRDDDSEETVRRRLEVYHTQTEPIIDYYRAQGLVVTISALGPVEEVTQRAMDALK 214          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_AQUAE (Adenylate kinase OS=Aquifex aeolicus GN=adk PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 62/198 (31.31%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQG----------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  R                         REDD  E I KRL+V+ + + P+++YY+ KG ++ IDA+KPV EV+  V  V
Sbjct:    6 LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEV 201          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_AZOPC (Adenylate kinase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=adk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            G PGSGKGTQ   I E +    +S G++LR EIK  +E G + +  I +G+++P  +TI++L    ++  N+K ++ DGFPR      A + + K +      V      E+E+ RR+L R +   R+DDN+ETI  RL V+ + +  V +YY  KGK+ +I     V EVF+ +
Sbjct:    8 GAPGSGKGTQSELISEKYSLYPISTGEILRREIKDKTELGKIAEEYINQGQLLPDYLTIRILVDLFDKVDNNKGYIFDGFPRTISQAKALDDLLKEQNTSIAIVFSLSVDEKELIRRLLKRGKLFSRKDDNLETIQNRLTVYREQTESVQEYYRKKGKLMEIIGKNSVEEVFENI 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SYNR3 (Adenylate kinase OS=Synechococcus sp. (strain RCC307) GN=adk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 59/175 (33.71%), Postives = 106/175 (60.57%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            +G PG+GKGTQ   +  + G  HLS GDLLRAE+K+GSE G   + ++  G++V   + + +++  + +S +  +L+DGFPRN     A +A+     +P + VL  +  ++E+ +R+L R  GR DDN E I  RL V+ + + P++ +YE +G+++++ +   +  V + + A
Sbjct:    8 VGPPGAGKGTQAERLAANHGLLHLSTGDLLRAEVKAGSELGKEAEAVMNRGELVSDALVLAIVRSRL-QSHSGGWLLDGFPRNLAQAEALDALLSELNQPLQSVLLMELDDDELVQRLLAR--GRADDNEEVIRHRLSVYREQTAPLINHYEQRGQLKRVVSTGTIEAVAEQITA 179          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_EUBR3 (Adenylate kinase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=adk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 64/206 (31.07%), Postives = 109/206 (52.91%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL-LQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I   +   H+S GD+ RA IK+G+E G   +  + +G +VP E+T  L + +  ++   + F++DGFPR   + +A  +A+TKI  + ++ +  D  +E +  R+  R    N G                         R+DD  ET+ KRL V+ + + P+++YY+ +G ++ +D  KP+ EVF A+  +
Sbjct:    6 LGAPGAGKGTQAKQIAAKYSIPHISTGDIFRANIKNGTELGKKAKTYMDQGALVPDELTCDLVMDRIQQDDCKNGFVLDGFPRTIPQAKALDDALTKIGEKMDYAIDVDVPDENIVNRMGGRRACLNCGATYHIVFNPTKVEGKCDACGADTVLRDDDKPETVQKRLAVYHEQTQPLIEYYDKQGILKSVDGTKPMDEVFSAIVGI 211          
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_CORU73.664e-2537.57Adenylate kinase OS=Corynebacterium urealyticum (s... [more]
KAD_THET88.163e-2534.44Adenylate kinase OS=Thermus thermophilus (strain H... [more]
KAD_THET28.163e-2534.44Adenylate kinase OS=Thermus thermophilus (strain H... [more]
KAD_PARD82.375e-2435.23Adenylate kinase OS=Parabacteroides distasonis (st... [more]
KAD_BACTN2.375e-2438.46Adenylate kinase OS=Bacteroides thetaiotaomicron G... [more]
KAD_STRAW5.291e-2433.97Adenylate kinase OS=Streptomyces avermitilis GN=ad... [more]
KAD_AQUAE5.291e-2431.31Adenylate kinase OS=Aquifex aeolicus GN=adk PE=1 S... [more]
KAD_AZOPC6.910e-2436.00Adenylate kinase OS=Azobacteroides pseudotrichonym... [more]
KAD_SYNR39.025e-2433.71Adenylate kinase OS=Synechococcus sp. (strain RCC3... [more]
KAD_EUBR31.179e-2331.07Adenylate kinase OS=Eubacterium rectale (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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