CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SYNS9 (Adenylate kinase OS=Synechococcus sp. (strain CC9902) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 59/173 (34.10%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            LG PG+GKGTQ A I +  G  HLS GDLLR+E+ +GSE G   + ++  G++V  ++ + +++  M+    + +L+DGFPR      A E +    K   E V+  +  +  +  R+L+R  GR DDN + I  RL+V+   + P++ YY+ KG +  + A   V E+ + +
Sbjct:    8 LGPPGAGKGTQAARICDSNGMKHLSTGDLLRSEVAAGSELGKEAEAVMNRGELVSDQLVLAIVESQMKALSGEGWLLDGFPRTVPQAEALEPLLNELKQPIEAVVLLELDDAVLITRMLSR--GRADDNEDVIRNRLEVYRDKTAPLISYYQNKGLLISVPAQGSVEEITERI 178          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SYNPW (Adenylate kinase OS=Synechococcus sp. (strain WH7803) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 58/175 (33.14%), Postives = 98/175 (56.00%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            +G PG+GKGTQ + + E  G  HLS GDLLR+E+ +GS  G   + ++  G++V  ++ + +++  +       +L+DGFPRN     A E +    +   E V+  +  +E +  R+L R  GR DDN   I  RL+V+ Q + P++ YY+A+G +  +DA   V  +   ++A
Sbjct:    8 IGPPGAGKGTQASRLCETHGLRHLSTGDLLRSEVSAGSALGQEAEAVMNRGELVSDDLVLAIVRSQLTALNGQGWLLDGFPRNVAQAEALEPLLGELQQSIETVVLLELDDEVLVERLLAR--GRADDNESVIRNRLEVYRQQTAPLIDYYQARGLLISVDAQGSVEAITTRLEA 180          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PORGI (Adenylate kinase OS=Porphyromonas gingivalis GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            G PGSGKGTQ   ++  +G+ H+S G+LLRAEIK+ +E G      I EG +VP  + + +++K +      +  + DGFPR      A E +      + + VL     EE +  R+LNR +  GR DDN+ETI KRL V+   + P+V ++  K  +  +     + E+
Sbjct:    8 GAPGSGKGTQSEELIRRYGFRHISTGELLRAEIKAQTELGQAAAGYINEGHLVPDSLIVDMMEKLISTLVDTEGIIFDGFPRTIPQAEAMETMLAHHGWKVDIVLNLQVPEEMLIERLLNRGKVSGRSDDNIETIRKRLDVYANETAPLVDFFTRKNVLHNVVGTGTIEEI 178          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PORG3 (Adenylate kinase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            G PGSGKGTQ   ++  +G+ H+S G+LLRAEIK+ +E G      I EG +VP  + + +++K +      +  + DGFPR      A E +      + + VL     EE +  R+LNR +  GR DDN+ETI KRL V+   + P+V ++  K  +  +     + E+
Sbjct:    8 GAPGSGKGTQSEELIRRYGFRHISTGELLRAEIKAQTELGQAAAGYINEGHLVPDSLIVDMMEKLISTLVDTEGIIFDGFPRTIPQAEAMETMLAHHGWKVDIVLNLQVPEEMLIERLLNRGKISGRSDDNIETIRKRLDVYANETAPLVDFFTRKNVLHNVVGTGTIEEI 178          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PARL1 (Adenylate kinase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 63/182 (34.62%), Postives = 102/182 (56.04%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCS--EEEMERRILNRNQG-REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   + E  G   LS GD+LRA +  GSE G + + ++  G++VP +V + ++   +E+    + +++DGFPRN     A + +     T ++    L  D S   + +E R      G R DDN E + KRLKV+ + + P++ YY+AKGK++ +D  K + EV   ++ V
Sbjct:    6 LGPPGAGKGTQAKRLEEAHGLVQLSTGDMLRAAVAQGSEVGKVAEGIMARGELVPDDVVVGIIADRIEQPDAVNGYILDGFPRNVAQAEALDKMLAGKGTTLDAVVELGVDDSILLKRIETRAAETAGGPRADDNAEALAKRLKVYHEQTAPLIAYYKAKGKLRTVDGMKSMDEVTGQIETV 187          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_MYCA9 (Adenylate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 67/171 (39.18%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVF 692
            LG PG+GKGTQ   I E FG   +S GDL R+ I  G+E G   +  +  G +VPSEVT K+++  ++E      F++DGFPR  +     AA E    +  + VL F    EE+ +R+L R  GR DD  + I  RL V+   + P+++YY+    +Q IDA   V EVF
Sbjct:    6 LGPPGAGKGTQAQLISEKFGIPQISTGDLFRSNISEGTELGLQAKQYLDAGDLVPSEVTNKMVEARLDEPDAAAGFILDGFPRTVDQADALAAMEEARGVTIDAVLEFRVPVEELVQRLLGR--GRADDTEDIIRNRLNVYRDETAPLLEYYQ--NVLQTIDAVGTVDEVF 172          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SYNJB (Adenylate kinase OS=Synechococcus sp. GN=adk PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 60/179 (33.52%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDD-NVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   +   +    +S GDLLRAE+K+ +  G   +  +  G++VP EV I +++  +++S    +++DGFPR      A E + +    + ++VL  +  +E +  R+L R   QGR DD +   I+KRL+V+ Q + P++ +YEAKG++Q+++  +P+  V + ++A+
Sbjct:    7 LGPPGAGKGTQAERLAAIYHTPKISTGDLLRAEVKAQTPLGCQAKVYMDAGELVPDEVLIGMVKGQLQQSPEQGWILDGFPRTLAQAEALEELLQELGQDYDYVLNLEVPDEVVVARLLARGKEQGRSDDADRSVILKRLEVYRQQTAPLIDFYEAKGRLQRVNGNQPMESVQEHLQAL 185          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_RHIEC (Adenylate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=adk PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 66/209 (31.58%), Postives = 109/209 (52.15%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRN------------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFT 716
            LG PG+GKGTQ   IVE  G   LS GD+LRA + +G+E G   + ++  GK+V  E+ I ++ + +++    + F++DGFPR      A EA+ K   ++   V+ F   +EE+ RR+  R                               + R DDN ET++KRL+V+ + + P++ YY AKGK++ +D    + +V   V+A+ +
Sbjct:    6 LGPPGAGKGTQAQRIVEKHGIPQLSTGDMLRAAVNAGTEVGKRAKAVMDAGKLVSDEIVIAIVSERIDQPDCANGFILDGFPRTLVQADATEAMLKAKGLDLSVVIEFRVDDEELVRRVDGRYTCAQCGTVYHDTDKVPVEEGVCDKCGSTHFKRRPDDNAETMIKRLEVYYKETSPLIGYYHAKGKLRPVDGMAEIDQVTAEVEAILS 214          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_THEFY (Adenylate kinase OS=Thermobifida fusca (strain YX) GN=adk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            +G PG+GKGTQ   +        +S GD+ RA +  G+E G   Q  +  G +VP E+T  +++ +  E+     FL+DGFPRN    E      A   ++ + VL     EEE+ RR+  R +   R DDN ETI  RL V+ + + P+V +YE +G ++KIDA  P+ EV
Sbjct:    6 VGPPGAGKGTQAQILASKLSIPKVSTGDIFRANVSGGTELGKKAQAYMDRGDLVPDEITNAMVRDRLAEDDARAGFLLDGFPRNLAQAETLDEMLADLGVKLDVVLELVVDEEEVIRRLAERARIDNRSDDNEETIRHRLVVYREQTAPLVSFYEKRGLLEKIDAVGPIEEV 177          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_STRM5 (Adenylate kinase OS=Stenotrophomonas maltophilia (strain R551-3) GN=adk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            LG PGSGKGTQ   + E  G  H+S GD+LRAEI +GSE G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN     A +  + KI +P + V+  D + E +  RI  R   QGR DD+ E + +RL+V+   + PVV +Y A+G + ++D    + E+
Sbjct:    6 LGPPGSGKGTQATRLKEKLGIAHISTGDMLRAEIAAGSELGKQAKAVMDAGNLVSDDILLGMLESRLTQADVAKGFILDGYPRNVAQANAMDGLLAKIGQPLDAVVQLDVATELLVDRIAGRAKEQGRADDSPEAVRQRLQVYNDQTAPVVDFYAARGTLARVDGVGELDEI 177          
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_SYNS91.539e-2334.10Adenylate kinase OS=Synechococcus sp. (strain CC99... [more]
KAD_SYNPW1.539e-2333.14Adenylate kinase OS=Synechococcus sp. (strain WH78... [more]
KAD_PORGI1.539e-2334.50Adenylate kinase OS=Porphyromonas gingivalis GN=ad... [more]
KAD_PORG31.539e-2334.50Adenylate kinase OS=Porphyromonas gingivalis (stra... [more]
KAD_PARL11.539e-2334.62Adenylate kinase OS=Parvibaculum lavamentivorans (... [more]
KAD_MYCA91.539e-2339.18Adenylate kinase OS=Mycobacterium abscessus (strai... [more]
KAD_SYNJB2.011e-2333.52Adenylate kinase OS=Synechococcus sp. GN=adk PE=3 ... [more]
KAD_RHIEC2.011e-2331.58Adenylate kinase OS=Rhizobium etli (strain CFN 42 ... [more]
KAD_THEFY3.429e-2336.63Adenylate kinase OS=Thermobifida fusca (strain YX)... [more]
KAD_STRM53.429e-2336.05Adenylate kinase OS=Stenotrophomonas maltophilia (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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