CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_LEPBP (Adenylate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=adk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 59/176 (33.52%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +G PG+GKGTQ   I E +    +S GD+LRA +K+G+  G   +  +  G +VP  V I +++ + +E    + F++DGFPR  E   A   + K   +E + V+  D  +EE+ +R+L R   +GR DDN ETI  RL  +   +LP++ +Y+A G +++I+    + E+ + +
Sbjct:    7 MGPPGAGKGTQADIIKEKYNIPQISTGDILRAAVKNGTAMGIEAKKYMDAGDLVPDAVVIGIIRDRLVEADCANGFILDGFPRTVEQAKALSEILKELHMELDSVVNLDVPDEELVKRLLGRAIKEGRSDDNEETIKNRLHTYNTKTLPLIDFYKATGILRQINGLGSMEEITNTI 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_LEPBA (Adenylate kinase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=adk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 59/176 (33.52%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAV 701
            +G PG+GKGTQ   I E +    +S GD+LRA +K+G+  G   +  +  G +VP  V I +++ + +E    + F++DGFPR  E   A   + K   +E + V+  D  +EE+ +R+L R   +GR DDN ETI  RL  +   +LP++ +Y+A G +++I+    + E+ + +
Sbjct:    7 MGPPGAGKGTQADIIKEKYNIPQISTGDILRAAVKNGTAMGIEAKKYMDAGDLVPDAVVIGIIRDRLVEADCANGFILDGFPRTVEQAKALSEILKELHMELDSVVNLDVPDEELVKRLLGRAIKEGRSDDNEETIKNRLHTYNTKTLPLIDFYKATGILRQINGLGSMEEITNTI 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_CAMC1 (Adenylate kinase OS=Campylobacter concisus (strain 13826) GN=adk PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 60/176 (34.09%), Postives = 94/176 (53.41%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            +G PGSGK T  + I +H   + H S GDLLRAE+ SGSE G +I   I +G +VP +V +  +  A++ S     +IDG+PR+ E     + V   + E     V+  D SE+    R+L R +G  DDN E    R+KV+L    P+ ++Y  K  +  ++  + + E+   +K
Sbjct:    8 IGAPGSGKTTDASLIAQHDEKFAHFSTGDLLRAEVASGSELGKLIDGFISKGNLVPLDVVVNAIVSAIKSSNKSNIIIDGYPRSVEQMTELDKVLSEQDEISLKGVIEVDVSEDVARARVLGRARG-ADDNNEVFNNRMKVYLDPIKPIRKFYSEKELLHVVNGERGIDEIVADIK 182          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_HYDS0 (Adenylate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=adk PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 59/205 (28.78%), Postives = 105/205 (51.22%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            LG PGSGKGTQ A +     + H+S GD+LRAE+   S  G   +  +K+G +VP ++ I +++  + E+ +  ++ DGFPRN     AFE +    +++ + V +FD  ++ + +R+  R                                R+DD  E I+ RL+V+ + + P+++YY+ K K+  + A     EVF+ +K++
Sbjct:    6 LGPPGSGKGTQGALLKSELSFEHISTGDMLRAEVSKKSPLGLKAEEYMKQGLLVPDDLIIAMIKNILTEAPHKNYVFDGFPRNVNQAEAFETMLNTMRLQVDKVFYFDLEDDVIIKRLSGRRVCPKCGATYNIYYQKPKNDTLCDNDATPLIQRDDDKEEVIVNRLRVYKEQTFPLIEYYKYKNKLFVVSADGTQEEVFEKLKSM 210          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BRAHW (Adenylate kinase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=adk PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 63/175 (36.00%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            +G PG GKGTQ A I + +  +H++ GD+LR  I +G+E G   ++ + +G++VP  + I +L+ +  ++   + F++DGFPR  E       + +    +   V+    SEE +  R+L R  GR DDN ETI  RLKVF   S PV+ YY  K K+ KI++     EV+  +K
Sbjct:    7 IGAPGVGKGTQSALIEKDYSISHIATGDMLRENIANGTELGKTAKSYMDKGELVPDSLVIDMLKDRIKKDDCKNGFMLDGFPRTIEQAKELSNILESLNYKISAVIDIFASEEIIIDRLLKR--GRADDNEETIKNRLKVFENQSKPVLDYYSDKAKIIKIESIGTPEEVYAKIK 179          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PROAC (Adenylate kinase OS=Propionibacterium acnes GN=adk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 58/172 (33.72%), Postives = 97/172 (56.40%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL-LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEP---EFVLFFDCSEEEMERRILNRN--QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            +G PG+GKGTQ   I EH+    +S GD+ R  IK+G+E G  ++ ++  G +VP E+T  + + +  ++   + FL+DG+PRN     A +A  K      + V+  D   E + +R+L R   +GR DDN ETI  R+KV+   + P++++Y + G +  +D    + EV
Sbjct:    6 MGAPGAGKGTQATAIAEHYSVPAISTGDMFRTNIKNGTELGKKVKAIMDAGDLVPDELTDAIVVDRLNQDDAANGFLLDGYPRNMHQVEALDAYLKEHGQRLDAVISLDVDPELLTQRLLKRAEIEGRTDDNEETIRNRMKVYSSQTEPLLEHYRSAGILVPVDGVGEIDEV 177          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_NITSB (Adenylate kinase OS=Nitratiruptor sp. (strain SB155-2) GN=adk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 61/172 (35.47%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEP----EFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            +G PGSGK T    I +       H S GDLLR E+K G+  G  I + I  G++VP E+ +  ++ A+  S  +  +IDGFPR+ E   A + + +  P    E V+    SEE    R+L R +G  DDNVE    R+K++L+    + ++YE KG ++KID  + + E+
Sbjct:    8 IGAPGSGKTTDAEIIAKKHSDLIAHYSTGDLLREEVKKGTPLGATIASFIDNGQLVPLEIVMDTIKNAILNSDKEVIIIDGFPRSVEQMEALDKMLQENPSIKLEAVIEVVVSEETARERVLGRARG-ADDNVEVFNNRMKLYLEPLNQIEEFYEKKGLLKKIDGERTIEEI 178          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_EXISA (Adenylate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=adk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 65/206 (31.55%), Postives = 106/206 (51.46%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR-----------------------------NQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            +G PG+GKGTQ A IVE +   H+S GD+ RA IK G+  G   ++ + +G++VP EVTI ++++ + +   +K FL+DGFPR      A E++ K    + + V+  D   E +  R+  R                                REDD  ET+ +RL V ++ S P++ +Y  KG ++ +D  +P+  V+  VKA+
Sbjct:    6 MGLPGAGKGTQAAKIVEEYQIPHISTGDMFRAAIKGGTPLGKEAKSFMDKGELVPDEVTIGIVRERLSQDDTEKGFLLDGFPRTVAQAEALESLLKDLGKQIDHVVNIDVDAEILVPRLTGRWICPTCGATYHVIFNPPKVEGICDVDGSALMQREDDKEETVRRRLDVNIEQSKPLIDFYAEKGYLRTLDGDRPIDVVYADVKAL 211          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD1_SYNY3 (Adenylate kinase 1 OS=Synechocystis sp. (strain PCC 6803) GN=adk1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 61/181 (33.70%), Postives = 102/181 (56.35%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAF--EAVTKI--EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFTP 719
            LG PGSGKGTQ   + E  G  H+S GD+LR  I  G+E G   +  + +G++VP ++ + L+++ +  +     +++DGFPRN  N+A F  E +  I     +V+     +E +  R+L R  GR DDN  TI  RL V+ + + P++ YY+ +GK+  +D  +PV  +   ++ +  P
Sbjct:    8 LGAPGSGKGTQAVGLAETLGIPHISTGDMLRQAIADGTELGNQAKGYMDKGELVPDQLILGLIEERLGHKDAKAGWILDGFPRN-VNQAIFLDELLVNIGHRTHWVINLKVPDEVIVERLLAR--GRADDNETTIRNRLLVYTEQTAPLMAYYQEQGKLYSLDGNQPVEAIATNLEKLVKP 185          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_STRSV (Adenylate kinase OS=Streptococcus sanguinis (strain SK36) GN=adk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 68/213 (31.92%), Postives = 106/213 (49.77%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFT 716
            +G PG+GKGTQ A IV+HF   H+S GD+ RA I + +E G + ++ I +G++VP EVT      +L Q  ++E+G   FL+DG+PR  E   A +                +++P  +L      E +  RI++R  G                    REDD  ET+ +RL V +    P++ +Y  KG V  I   + + +VF A++ V T
Sbjct:    6 MGLPGAGKGTQAAKIVDHFNVAHISTGDMFRAAIANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQNDIKETG---FLLDGYPRTIEQAHALDQTLTELDLALDGVINIEVDPNSLL------ERLSGRIIHRETGETFHKVFNPPADYKEEDYYQREDDKPETVKRRLDVNIAQGQPIIDHYRRKGLVHDIQGNQDINDVFSAIEKVLT 209          
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_LEPBP3.429e-2333.52Adenylate kinase OS=Leptospira biflexa serovar Pat... [more]
KAD_LEPBA3.429e-2333.52Adenylate kinase OS=Leptospira biflexa serovar Pat... [more]
KAD_CAMC13.429e-2334.09Adenylate kinase OS=Campylobacter concisus (strain... [more]
KAD_HYDS04.479e-2328.78Adenylate kinase OS=Hydrogenobaculum sp. (strain Y... [more]
KAD_BRAHW4.479e-2336.00Adenylate kinase OS=Brachyspira hyodysenteriae (st... [more]
KAD_PROAC5.850e-2333.72Adenylate kinase OS=Propionibacterium acnes GN=adk... [more]
KAD_NITSB5.850e-2335.47Adenylate kinase OS=Nitratiruptor sp. (strain SB15... [more]
KAD_EXISA5.850e-2331.55Adenylate kinase OS=Exiguobacterium sp. (strain AT... [more]
KAD1_SYNY35.850e-2333.70Adenylate kinase 1 OS=Synechocystis sp. (strain PC... [more]
KAD_STRSV7.640e-2331.92Adenylate kinase OS=Streptococcus sanguinis (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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