CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_NATPD (Adenylate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=adk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 63/197 (31.98%), Postives = 105/197 (53.30%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG-------------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            LG PG+GKGTQ +NIV+ +G  H++ GD LRA     +E+GT  +  ++ G++VP  V  +++Q A++E+  D F++DG+PRN         +T +  + V   D   +E+  R+  R                            R+DD  ET+ +RL VF +++ PV+ YYE +G++ +ID      EV+D ++A
Sbjct:    9 LGAPGAGKGTQSSNIVDEYGVDHITTGDALRANKDMETEHGTP-REFMEAGELVPDPVVNEIVQAAIDEA--DGFVLDGYPRNLSQAEYLSDITDV--DVVALLDVGRDELVDRLTGRRMDPETGDIYHTEFNMPDDEEVRERLVQRDDDTEETVNERLDVFDENTQPVIDYYEDEGELVRIDGEASPDEVWDDLQA 200
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECOL6 (Adenylate kinase OS=Escherichia coli O6 GN=adk PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/208 (33.65%), Postives = 105/208 (50.48%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECOL5 (Adenylate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/208 (33.65%), Postives = 105/208 (50.48%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECO81 (Adenylate kinase OS=Escherichia coli O81 (strain ED1a) GN=adk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/208 (33.65%), Postives = 105/208 (50.48%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECO7I (Adenylate kinase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/208 (33.65%), Postives = 105/208 (50.48%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECO27 (Adenylate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=adk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/208 (33.65%), Postives = 105/208 (50.48%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV  A++ +
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAALEKI 212
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_CORA7 (Adenylate kinase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=adk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 62/169 (36.69%), Postives = 100/169 (59.17%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYY-------EAKGKVQKID 665
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   ++ I  GK+VP++VT ++++  + ++   D FL+DGFPR  +     E +     ++ + VL F+ SE+ +  R+L R  GR DD  ETI  RL V+ + + P++++Y       +A+G V++I+
Sbjct:    6 LGPPGAGKGTQAALLSEKLGVPHISTGDLFRANIGEGTPLGLEAKSYIDAGKLVPTDVTARMVEDRLNQDDAKDGFLLDGFPRTVQQADILEKLLSDKDLKLDGVLNFEVSEDVVVERMLAR--GRADDTEETIRTRLGVYREETFPLIEHYGDAIISIKAEGTVEEIN 172
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_STRA5 (Adenylate kinase OS=Streptococcus agalactiae serotype V GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 68/209 (32.54%), Postives = 104/209 (49.76%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVF-DAVKAV 710
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+ +RL V +    P++++Y   G V  I+  + + EVF D  KA+
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKAL 208
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_STRA3 (Adenylate kinase OS=Streptococcus agalactiae serotype III GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 68/209 (32.54%), Postives = 104/209 (49.76%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GNDKFLIDGFPRNEENRAAFEAV-------------TKIEPEFVLFFDCSEEEMERRILNRNQG--------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVF-DAVKAV 710
            +G PG+GKGTQ A IVE FG  H+S GD+ RA + + +E G + ++ I +G++VP EVT  ++++ + E       FL+DG+PR  E   A +A               K++P       C  E +  RI+NR  G                    REDD  ET+ +RL V +    P++++Y   G V  I+  + + EVF D  KA+
Sbjct:    6 MGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDP------SCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKAL 208
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECO8A (Adenylate kinase OS=Escherichia coli O8 (strain IAI1) GN=adk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 69/201 (34.33%), Postives = 102/201 (50.75%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E  ++ FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCHNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_NATPD9.978e-2331.98Adenylate kinase OS=Natronomonas pharaonis (strain... [more]
KAD_ECOL69.978e-2333.65Adenylate kinase OS=Escherichia coli O6 GN=adk PE=... [more]
KAD_ECOL59.978e-2333.65Adenylate kinase OS=Escherichia coli O6:K15:H31 (s... [more]
KAD_ECO819.978e-2333.65Adenylate kinase OS=Escherichia coli O81 (strain E... [more]
KAD_ECO7I9.978e-2333.65Adenylate kinase OS=Escherichia coli O7:K1 (strain... [more]
KAD_ECO279.978e-2333.65Adenylate kinase OS=Escherichia coli O127:H6 (stra... [more]
KAD_CORA79.978e-2336.69Adenylate kinase OS=Corynebacterium aurimucosum (s... [more]
KAD_STRA51.702e-2232.54Adenylate kinase OS=Streptococcus agalactiae serot... [more]
KAD_STRA31.702e-2232.54Adenylate kinase OS=Streptococcus agalactiae serot... [more]
KAD_ECO8A1.702e-2234.33Adenylate kinase OS=Escherichia coli O8 (strain IA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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