CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD2_CAEBR (Adenylate kinase 2, mitochondrial OS=Caenorhabditis briggsae GN=let-754 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 72/211 (34.12%), Postives = 107/211 (50.71%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQG-------------------------REDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV---FDAVKAVFT 716
            +G PGSGKGTQ       +   HL+ GDLLRAE+ SGSE G  ++  +  GK+V  +V  KL+++ +E+      F++DGFPR        + +    K   + V+ F+ +++ + RRI  R      G                         R DDN ET+ KRL  + Q ++P+V YY+  G   K+DAAKP+A+V    D+V A FT
Sbjct:   43 IGPPGSGKGTQAPAFASKYFSCHLATGDLLRAEVASGSEFGKQLKATMDAGKLVSDDVVCKLIEQKLEKPECKYGFILDGFPRTSGQAEKLDEILERRKTPLDTVVEFNIADDLLVRRITGRLFHIASGRSYHLEFKPPKVPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVDYYQKHGVHVKVDAAKPMADVKAHIDSVFAKFT 253          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_WOLSU (Adenylate kinase OS=Wolinella succinogenes GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 59/172 (34.30%), Postives = 95/172 (55.23%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            +G PGSGK T    I ++      H S G+LLRAE+ SGSE G +I+    +G +VP E+ ++ +  A++ +  +  LIDG+PR+ E   A + + K E +     V+  + SE+    R+L R +G  DDN E    R+ V+L    P+  +Y AKG + KI+  + + E+
Sbjct:    8 IGAPGSGKTTDAEIIAKNNPDSINHYSTGELLRAEVASGSERGKIIEGFTSKGNLVPLEIVVETIVSAIKNAPKNVVLIDGYPRSTEQMEALDKILKEESDVELTNVIEVEVSEQVACDRVLGRARG-ADDNAEVFRNRMSVYLAPLKPIQAFYTAKGILHKINGERTIEEI 178          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SHIF8 (Adenylate kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SHIBS (Adenylate kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SHIB3 (Adenylate kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PROM4 (Adenylate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 59/169 (34.91%), Postives = 98/169 (57.99%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEV 689
            LG PG+GKGTQ   + E+ G  HLS GDLLRAE+ + S  G     ++ +G++V  E+ + ++QK +       +L+DGFPRN     + + + +   +P + VL  +  +E + +R+L+R  GR DD  E I  RL+V+ + + P+V +Y++ G + KI     V +V
Sbjct:    8 LGPPGAGKGTQAKLLCENQGLIHLSTGDLLRAEVNAQSPLGKEAALIMNKGELVSDEIVLSIVQKRLSADAKSGWLLDGFPRNLIQAQSLQQLLENVSQPIQAVLLIELDDETLIKRLLSR--GRSDDTQEVIRHRLEVYREKTAPLVDFYQSLGILVKIQGEGDVKDV 174          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_LEUCK (Adenylate kinase OS=Leuconostoc citreum (strain KM20) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 61/178 (34.27%), Postives = 96/178 (53.93%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   IV+ +   H+S GD+ RA + + +  G   +  +  G +VP E+T  ++   + +     + F++DG+PRNE      +   A         L+F+ S+  +  R+L R  GR DD  E I  RL+V   ++LP+V YY+  G +  ID  + +AEV+  VKAV
Sbjct:    8 LGLPGAGKGTQAEFIVKDYPTVHISTGDIFRANLANDTSLGKQAREYMDAGNLVPDEITNAMVADRLNQDDVQANGFMLDGYPRNEAQAEFLDHYLAENNSAVSATLYFEVSDSLLRERLLGR--GRADDTPEVIDNRLEVNKAANLPLVDYYKRAGVLHTIDGGRELAEVYHDVKAV 183          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ESCF3 (Adenylate kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECOSM (Adenylate kinase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_ECOSE (Adenylate kinase OS=Escherichia coli (strain SE11) GN=adk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEV 689
            LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R                                R+DD  ET+ KRL  + Q + P++ YY  +      K  K+D  KPVAEV
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEV 205          
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD2_CAEBR1.702e-2234.12Adenylate kinase 2, mitochondrial OS=Caenorhabditi... [more]
KAD_WOLSU2.223e-2234.30Adenylate kinase OS=Wolinella succinogenes GN=adk ... [more]
KAD_SHIF82.223e-2234.33Adenylate kinase OS=Shigella flexneri serotype 5b ... [more]
KAD_SHIBS2.223e-2234.33Adenylate kinase OS=Shigella boydii serotype 4 (st... [more]
KAD_SHIB32.223e-2234.33Adenylate kinase OS=Shigella boydii serotype 18 (s... [more]
KAD_PROM42.223e-2234.91Adenylate kinase OS=Prochlorococcus marinus (strai... [more]
KAD_LEUCK2.223e-2234.27Adenylate kinase OS=Leuconostoc citreum (strain KM... [more]
KAD_ESCF32.223e-2234.33Adenylate kinase OS=Escherichia fergusonii (strain... [more]
KAD_ECOSM2.223e-2234.33Adenylate kinase OS=Escherichia coli (strain SMS-3... [more]
KAD_ECOSE2.223e-2234.33Adenylate kinase OS=Escherichia coli (strain SE11)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
back to top