CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SOLLC (Cytochrome c OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF+EAPPGN KAGEKIFKTKCAQCHTVEKGAGHK+GPNLNGLFGRQSGTT GYSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFNEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKEGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ORYSJ (Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   83 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLK++T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   83 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLK++T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CANSA (Cytochrome c OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 97/111 (87.39%), Postives = 108/111 (97.30%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF++APPG++KAGEKIFKTKCA+CHTV +GAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W++KTLYDYLLNPKKYIPGTKMVFPGLKKP++RADLIAYLK+STA
Sbjct:    1 ASFBZAPPGBSKAGEKIFKTKCAECHTVGRGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKPZBRADLIAYLKESTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SESIN (Cytochrome c OS=Sesamum indicum PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.885e-56
Identity = 99/111 (89.19%), Postives = 107/111 (96.40%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF++APPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFBZAPPGBVKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVIWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_FRIAG (Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.311e-55
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   83 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            MASF EAPPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AVNW+E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++T+
Sbjct:    1 MASFSEAPPGDFKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVNWDENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATS 112          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ACENE (Cytochrome c OS=Acer negundo PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.311e-55
Identity = 103/111 (92.79%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAPPGN  AGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAVNW   TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:    1 ASFAEAPPGNPAAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGYNTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ARUMA (Cytochrome c OS=Arum maculatum PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.982e-55
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAPPGN KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV WEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLIAYLK+STA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEESTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKESTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ALLPO (Cytochrome c OS=Allium porrum PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.450e-54
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            A+F +APPG+ KAG+KIFK KCAQCHTVEKGAGHKQGPNLNGLFGRQSGT  GYSYSAANKNMAV W++ TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ATFSZAPPGBZKAGQKIFKLKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTAAGYSYSAANKNMAVVWZZBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SOLTU (Cytochrome c OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.473e-54
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHK+GPNLNGLFGRQSGTT GYSYS ANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFGEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKEGPNLNGLFGRQSGTTAGYSYSNANKNMAVTWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_SOLLC2.642e-5691.89Cytochrome c OS=Solanum lycopersicum PE=1 SV=2[more]
CYC_ORYSJ2.642e-5690.18Cytochrome c OS=Oryza sativa subsp. japonica GN=CC... [more]
CYC_ORYSI2.642e-5690.18Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1... [more]
CYC_CANSA2.642e-5687.39Cytochrome c OS=Cannabis sativa PE=1 SV=1[more]
CYC_SESIN5.885e-5689.19Cytochrome c OS=Sesamum indicum PE=1 SV=1[more]
CYC_FRIAG1.311e-5589.29Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 ... [more]
CYC_ACENE1.311e-5592.79Cytochrome c OS=Acer negundo PE=1 SV=1[more]
CYC_ARUMA4.982e-5591.89Cytochrome c OS=Arum maculatum PE=1 SV=1[more]
CYC_ALLPO1.450e-5487.39Cytochrome c OS=Allium porrum PE=1 SV=1[more]
CYC_SOLTU2.473e-5489.19Cytochrome c OS=Solanum tuberosum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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