CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC23_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  146 KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNW-EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            +C  CH VE G     GP+L GLFG + G  PG+ YS A+   A    +E  L  YL +PK  +PG KMVF GLK P D   ++AYLK
Sbjct:    9 QCQACHKVEAGEDGV-GPSLFGLFGHKLGQAPGFKYSEAHLKFAQQTVDEPFLTKYLADPKASLPGNKMVFAGLKNPDDVKAVLAYLK 95          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CY550_AQUIT (Cytochrome c-550 OS=Aquaspirillum itersonii PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN---WEEKTLYDYLLNPKKYIPG--------TKMVFPGLKKPQDRADLIAYL 403
            G+A  G  + K+ C  CH+ E+G   KQGPNL G+  R  G   G++YS + K  A     W+  TL DY+ +P  ++           KM F  L KP +RAD+IAYL
Sbjct:    1 GDAAKGANVAKS-CGTCHSFEQGGAKKQGPNLFGITTRGPGKAEGFNYSPSYKAAAAKGFAWDAATLQDYITDPTAFLSNKTGDAAARDKMTFK-LAKPDERADVIAYL 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC22_RHOCE (Cytochrome c2 iso-2 OS=Rhodospirillum centenum PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK---NMAVNWEEKTLYDYLLNPKKYI--------------PGTKMVFPGLKKPQDRADLIAYLKQ 409
            G+   GE +FK KC  CH V   A +  GP L G+  RQ+GT PG++YSA N       ++W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLKQ
Sbjct:    3 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQ 117          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC21_RHOCE (Cytochrome c2 iso-1 OS=Rhodospirillum centenum PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK---NMAVNWEEKTLYDYLLNPKKYI--------------PGTKMVFPGLKKPQDRADLIAYLK 406
            G+   GE +FK KC  CH +   A +  GP L G+ GRQ+G  PG+SYSA N       ++W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK
Sbjct:    3 GDPVKGEAVFK-KCMACHRIGPDAKNLVGPVLTGVVGRQAGVAPGFSYSALNHAAGEAGLHWTAENIMAYLPDPNAFLRKFVTDAGNPEAAKGSTKMVFK-LPNEQERKDVVAYLK 116          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC23_RHOCR4.717e-1346.59Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CY550_AQUIT3.993e-1238.53Cytochrome c-550 OS=Aquaspirillum itersonii PE=1 S... [more]
CYC22_RHOCE1.162e-1136.75Cytochrome c2 iso-2 OS=Rhodospirillum centenum PE=... [more]
CYC21_RHOCE2.588e-1136.21Cytochrome c2 iso-1 OS=Rhodospirillum centenum PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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