CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_MAIZE (Cytochrome c OS=Zea mays PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAPPGN KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV WEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLIAYLK++TA
Sbjct:    1 ASFSEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVVWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKEATA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_FAGES (Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.603e-53
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            A+F EAPPGN K+GEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK ST
Sbjct:    1 ATFSEAPPGNIKSGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVTWGEDTLYEYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKBST 110          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_HELAN (Cytochrome c OS=Helianthus annuus GN=CYTC1 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.093e-53
Identity = 100/112 (89.29%), Postives = 101/112 (90.18%), Query Frame = 2
Query:   83 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            MASF EAP GN   GEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSA NKN AV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK STA
Sbjct:    1 MASFAEAPAGNPTTGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAGNKNKAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKTSTA 112          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_GUIAB (Cytochrome c OS=Guizotia abyssinica PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.093e-53
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAP G+AKAGEKIFKTKCA+CHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV W++ +LYDYLLNPKKYIPGTKMVFPGLKKP++RADLIAYLK STA
Sbjct:    1 ASFAEAPAGDAKAGEKIFKTKCAZCHTVZKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVAWZZBSLYDYLLNPKKYIPGTKMVFPGLKKPZZRADLIAYLKASTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_WHEAT (Cytochrome c OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.090e-53
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAPPGN  AG KIFKTKCAQCHTV+ GAGHKQGPNL+GLFGRQSGTT GYSYSAANKN AV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++T+
Sbjct:    1 ASFSEAPPGNPDAGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATS 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_TROMA (Cytochrome c OS=Tropaeolum majus PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.090e-53
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAP G+ KAG+KIFK KCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV W++ TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFAEAPAGDNKAGDKIFKNKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVLWZZATLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_NIGDA (Cytochrome c OS=Nigella damascena PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.090e-53
Identity = 91/111 (81.98%), Postives = 106/111 (95.50%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF++AP G++ +GEKIFKTKCA+CHTV++GAGHK+GPNL+GLFGRQSGT  GYSYSAANKN AVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP++RA+L+AYLK+STA
Sbjct:    1 ASFBZAPAGBSASGEKIFKTKCAZCHTVBZGAGHKZGPNLHGLFGRQSGTVAGYSYSAANKNKAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPZZRABLLAYLKESTA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_GINBI (Cytochrome c OS=Ginkgo biloba PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.022e-52
Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA*E 424
            A+F EAPPG+ KAGEKIFKTKCA+CHTV+KGAGHKQGPNL+GLFGRQSGTT GYSYS  NKN AVNW ++TLY+YLLNPKKYIPGTKMVFPGLKKP++RADLI+YLKQ+T+ E
Sbjct:    1 ATFSEAPPGDPKAGEKIFKTKCAZCHTVZKGAGHKQGPNLHGLFGRQSGTTAGYSYSTGNKNKAVNWGZZTLYEYLLNPKKYIPGTKMVFPGLKKPZZRADLISYLKQATSQE 113          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_PASSA (Cytochrome c OS=Pastinaca sativa PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.445e-51
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            ASF EAPPG+   G KIFKTKCA+CHTV+ GAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AV W + TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK +TA
Sbjct:    1 ASFAEAPPGDKDVGGKIFKTKCAZCHTVZLGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVLWABBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKHATA 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SPIOL (Cytochrome c OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 93/110 (84.55%), Postives = 96/110 (87.27%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            A+F EAPPGN   G KIFKTKCAQCHTV+ GAGHKQGPNLNGLFGRQSGT   YSYSAANKN AV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK ST
Sbjct:    1 ATFSEAPPGNKDVGAKIFKTKCAQCHTVDLGAGHKQGPNLNGLFGRQSGTAASYSYSAANKNKAVIWSEDTLYEYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKDST 110          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_MAIZE3.229e-5490.09Cytochrome c OS=Zea mays PE=1 SV=1[more]
CYC_FAGES1.603e-5389.09Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1[more]
CYC_HELAN2.093e-5389.29Cytochrome c OS=Helianthus annuus GN=CYTC1 PE=1 SV... [more]
CYC_GUIAB2.093e-5386.49Cytochrome c OS=Guizotia abyssinica PE=1 SV=1[more]
CYC_WHEAT6.090e-5387.39Cytochrome c OS=Triticum aestivum PE=1 SV=1[more]
CYC_TROMA6.090e-5387.39Cytochrome c OS=Tropaeolum majus PE=1 SV=1[more]
CYC_NIGDA6.090e-5381.98Cytochrome c OS=Nigella damascena PE=1 SV=1[more]
CYC_GINBI3.022e-5281.42Cytochrome c OS=Ginkgo biloba PE=1 SV=1[more]
CYC_PASSA7.445e-5184.68Cytochrome c OS=Pastinaca sativa PE=1 SV=1[more]
CYC_SPIOL6.302e-5084.55Cytochrome c OS=Spinacia oleracea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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