CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_TRACR (Cytochrome c OS=Trachypithecus cristatus GN=CYCS PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KI   KC+QCHTVEKG  HK GPN +GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKILIMKCSQCHTVEKGGKHKTGPNHHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_XENTR (Cytochrome c, testis-specific OS=Xenopus tropicalis GN=cyct PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+A+ G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W+E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLKQST+
Sbjct:    2 GDAEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEGTLLEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_BOVIN (Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.385e-35
Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  113 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            +A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F GLKK  +R DLI YLKQ+T+
Sbjct:    3 DAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTEANKNKGIIWGEQTLMEYLENPKKYIPGTKMIFAGLKKKSEREDLIEYLKQATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_DRONO (Cytochrome c OS=Dromaius novae-hollandiae GN=CYC PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC+QCHTVEKG  HK GPNLNGLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CHESE (Cytochrome c OS=Chelydra serpentina PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KCAQCHTVEKG  HK GPNLNGL GR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGLIGRKTGQAEGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKDATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CANAL (Cytochrome c OS=Candida albicans GN=CYC1 PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ K G  +FKT+C QCHTVEKG  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKKP+DR DL+ YLK++T+
Sbjct:    8 GSEKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLVTYLKKATS 110          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ANAPL (Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +TA
Sbjct:    2 GDVEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATA 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_RABIT (Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKDERADLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_LAMGU (Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ESCGI (Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_TRACR4.385e-3564.71Cytochrome c OS=Trachypithecus cristatus GN=CYCS P... [more]
CYC2_XENTR4.385e-3565.05Cytochrome c, testis-specific OS=Xenopus tropicali... [more]
CYC2_BOVIN4.385e-3566.67Cytochrome c 2 OS=Bos taurus GN=CYCT PE=3 SV=3[more]
CYC_DRONO5.727e-3564.08Cytochrome c OS=Dromaius novae-hollandiae GN=CYC P... [more]
CYC_CHESE5.727e-3564.08Cytochrome c OS=Chelydra serpentina PE=1 SV=2[more]
CYC_CANAL5.727e-3564.08Cytochrome c OS=Candida albicans GN=CYC1 PE=3 SV=3[more]
CYC_ANAPL7.479e-3564.08Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=... [more]
CYC_RABIT9.768e-3564.71Cytochrome c OS=Oryctolagus cuniculus GN=CYCS PE=1... [more]
CYC_LAMGU9.768e-3564.71Cytochrome c OS=Lama guanicoe GN=CYCS PE=1 SV=2[more]
CYC_ESCGI9.768e-3564.71Cytochrome c OS=Eschrichtius gibbosus GN=CYCS PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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