CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_XENLA (Cytochrome c, testis-specific OS=Xenopus laevis GN=cyct PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+K+F  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W+E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLKQST+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEDTLMVYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC1A_XENLA (Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-A PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.848e-34
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+A+ G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAEKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_MELGA (Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CHICK (Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_THELA (Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.269e-34
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  107 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            PG+A  G  +FKT+CAQCH+VE+G  +K GPNL+GLFGR++G+  GYSY+ ANK   + W E TL++YL NPKK+IPGTKM F GLKK +DR DLI YLK++T
Sbjct:    8 PGDASKGANLFKTRCAQCHSVEQGGANKIGPNLHGLFGRKTGSVEGYSYTDANKQAGITWNEDTLFEYLENPKKFIPGTKMAFGGLKKNKDRNDLITYLKEAT 110          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CYPCA (Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.269e-34
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+K+F  KCAQCHTVE G  HK GPNL GLFGR++G  PG+SY+ ANK+  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWBEZTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CROVV (Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.269e-34
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC  CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CROAT (Cytochrome c OS=Crotalus atrox PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.269e-34
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC  CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CROAD (Cytochrome c OS=Crotalus adamanteus PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.269e-34
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC  CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_TARBA (Cytochrome c OS=Tarsius bancanus GN=CYCS PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK G NL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGXNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC2_XENLA4.848e-3463.11Cytochrome c, testis-specific OS=Xenopus laevis GN... [more]
CYC1A_XENLA4.848e-3464.08Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-... [more]
CYC_MELGA6.331e-3462.14Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV... [more]
CYC_CHICK6.331e-3462.14Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2[more]
CYC_THELA8.269e-3461.17Cytochrome c OS=Thermomyces lanuginosus PE=1 SV=1[more]
CYC_CYPCA8.269e-3462.14Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc... [more]
CYC_CROVV8.269e-3463.11Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2[more]
CYC_CROAT8.269e-3463.11Cytochrome c OS=Crotalus atrox PE=1 SV=2[more]
CYC_CROAD8.269e-3463.11Cytochrome c OS=Crotalus adamanteus PE=1 SV=2[more]
CYC_TARBA1.080e-3363.73Cytochrome c OS=Tarsius bancanus GN=CYCS PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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