CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SCHPO (Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 61/104 (58.65%), Postives = 82/104 (78.85%), Query Frame = 2
Query:  107 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            PG+ K G  +FKT+CAQCHTVEKG  +K GPNL+G+FGR++G   G+SY+ AN++  + W+E+TL+ YL NPKKYIPGTKM F G KKP DR ++I YLK++T+
Sbjct:    5 PGDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKATS 108          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_DEBOC (Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.411e-33
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ K    +FKT+C QCHTVEKG  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKKP+DR DLI YL  +T
Sbjct:    8 GSEKKDANLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRKSGQAAGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLITYLANAT 109          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ATESP (Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.411e-33
Identity = 63/102 (61.76%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G++IF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKRIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQASGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_THEAN (Cytochrome c OS=Theileria annulata GN=TA12950 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            P G+   G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG+T  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   11 PEGDPAKGAKLFKSKCAQCHTINKGGSVKQGPNLFGFYGRKSGSTD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_DROME (Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c-p PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            P G+ + G+K+F  +CAQCHTVE G  HK GPNL+GL GR++G   G++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_CERCA (Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            P G+ + G+K+F  +CAQCHTVE G  HK GPNL+GL GR++G   G++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC1B_XENLA (Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-B PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+A  G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAGKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEETLLEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_THEPA (Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            P G++  G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG +  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   11 PEGDSSKGAKLFKSKCAQCHTINKGGSVKQGPNLYGFYGRKSGASD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_LAMTR (Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+K+F  KC+QCHTVEK   HK GPNL+GLFGR++G  PG+SY+ ANK+  + W ++TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKAGKHKTGPNLSGLFGRKTGQAPGFSYTDANKSKGIVWNQETLFVYLENPKKYIPGTKMIFAGIKKEGERKDLIAYLKKSTS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_HANAN (Cytochrome c OS=Hansenula anomala PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ K G  +FKT+C QCHTVEKG  HK GPNL+G+FGRQSG   GYSY+ AN   AV W E+T+ DYL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:    7 GSEKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGKAEGYSYTDANIKKAVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLANAT 108          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_SCHPO1.080e-3358.65Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 ... [more]
CYC_DEBOC1.411e-3363.73Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 ... [more]
CYC_ATESP1.411e-3361.76Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3[more]
CYC_THEAN1.842e-3362.86Cytochrome c OS=Theileria annulata GN=TA12950 PE=3... [more]
CYC2_DROME1.842e-3359.62Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c... [more]
CYC2_CERCA1.842e-3359.62Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2[more]
CYC1B_XENLA1.842e-3364.08Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-... [more]
CYC_THEPA2.406e-3361.90Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 ... [more]
CYC_LAMTR2.406e-3360.19Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV... [more]
CYC_HANAN2.406e-3363.73Cytochrome c OS=Hansenula anomala PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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