CB294021

Overview
NameCB294021
Unique NameCB294021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP1A2_RABIT (Cytochrome P450 1A2 OS=Oryctolagus cuniculus GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.453e-11
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W++  L+ NP    K++ EL+  +G+      SD  +LPYL+A   E FR    VP  +P     D+   GF  P    + +N W I  D +L  +P  F PERF
Sbjct:  328 WSLMYLVTNPRRQRKIQEELDAVVGRARQPRLSDRPQLPYLEAFILELFRHTSFVPFTIPHSTTRDTTLNGFHIPKECCIFINQWQINHDPQLWGDPEEFRPERF 432          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.453e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  L+ +P++  K++ E++  IG       SD   + +L A   E  R+ P  PLL+P  A ADS    +  P G +V++N W I  D +   NP +F P RF
Sbjct:  316 WMIIYLIHHPEVQKKIQEEIDSNIGFERTPKMSDKGNMNFLNATIHEILRIQPVSPLLIPHVALADSSIGDYTIPKGTRVIINLWAIHHDEKEWKNPDAFDPGRF 420          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP17A_FELCA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis catus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.453e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  LL +P +  K++ E++Q IG       SD ++L  L+A  +E  R+ P  P L+P KA  DS    F    G  V++N W +  + +    P  F+PERF
Sbjct:  313 WTVAFLLHHPQLYKKLQEEIDQNIGFSRTPTMSDRNQLILLEATIREVLRIRPVAPTLIPHKAIMDSSIGEFAVDKGTNVIINLWALHHNEKEWYRPDQFMPERF 417          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP21A_HUMAN (Steroid 21-hydroxylase OS=Homo sapiens GN=CYP21A2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.816e-11
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIG---KCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            WA+  LL +P+I  +++ EL+  +G     + +   D +RLP L A   E  RL P VPL LP +    S  +G+  P G  ++ N  G   D  + + P+ F P+RF
Sbjct:  302 WAVVFLLHHPEIQQRLQEELDHELGPGASSSRVPYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSISGYDIPEGTVIIPNLQGAHLDETVWERPHEFWPDRF 409          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP1A2_FELCA (Cytochrome P450 1A2 OS=Felis catus GN=CYP1A2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.816e-11
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W++  L+ NP+   K++ EL+  +G+      SD  +LPYL+A   E FR    +P  +P     D+   GF  P    V +N W +  D ++  +P+ F PERF
Sbjct:  324 WSLMYLVTNPEKQRKIQEELDTVVGRARRPRLSDRLQLPYLEASILEIFRHSSFIPFTVPHSTTRDTTLNGFYIPEKHLVFINQWQVNHDQKVWGDPFEFRPERF 428          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.596e-11
Identity = 35/107 (32.71%), Postives = 55/107 (51.40%), Query Frame = -2
Query:    6 EWAMTELLRNPDILSKVRLELEQPIGK-CNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 323
            +W M  L++ P+I  ++  E++  +G+    + E D+ ++PYL+AV  E  R HP    LLP     D+   G+K P    +      IGRD    + P +F PERF
Sbjct:  316 QWIMANLVKYPEIQERLHEEIKSVVGEEAKEVEEEDVEKMPYLKAVVLEGLRRHPPGHFLLPHSVTEDTVLGGYKVPKNGTINFMVAEIGRDPVEWEEPMAFKPERF 422          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP2U1_RAT (Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.920e-11
Identity = 35/105 (33.33%), Postives = 51/105 (48.57%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  +  NP +  KV  E+E+ IG+      +D +++PY +A   E  RL   VPL +P      +   G+  P G  VL N W I RD  + + P  F P RF
Sbjct:  349 WCLLYMSLNPGVQKKVHEEIERVIGRDRAPSLTDKAQMPYTEATIMEVQRLSMVVPLAIPHMTSEKTVLQGYSIPKGTVVLPNLWSIHRDPVIWEKPDDFCPHRF 453          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP21A_PIG (Steroid 21-hydroxylase OS=Sus scrofa GN=CYP21 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.920e-11
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKC---NPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            WA+  LL +P+I  +++ EL++ +G     + +   D +RLP L A   E  RL P VPL LP +A   S   G+  P G  V+ N  G   D  + + P+ F P+RF
Sbjct:  301 WAVVYLLHHPEIQWRLQEELDRELGPGAAGSRVPYKDRARLPLLNATIAEVLRLRPVVPLALPHRATRPSSIFGYDIPEGTVVIPNLQGAHLDETVWEQPHEFRPDRF 408          
The following BLAST results are available for this feature:
BLAST of CB294021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CP1A2_RABIT4.453e-1134.29Cytochrome P450 1A2 OS=Oryctolagus cuniculus GN=CY... [more]
CP17A_SQUAC4.453e-1133.33Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]
CP17A_FELCA4.453e-1133.33Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis ... [more]
CP21A_HUMAN5.816e-1133.33Steroid 21-hydroxylase OS=Homo sapiens GN=CYP21A2 ... [more]
CP1A2_FELCA5.816e-1132.38Cytochrome P450 1A2 OS=Felis catus GN=CYP1A2 PE=2 ... [more]
C89A2_ARATH7.596e-1132.71Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CY... [more]
CP2U1_RAT9.920e-1133.33Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1... [more]
CP21A_PIG9.920e-1135.19Steroid 21-hydroxylase OS=Sus scrofa GN=CYP21 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294021 ID=CB294021; Name=CB294021; organism=Citrus sinensis; type=EST; length=324bp
CCCCAAAACCTCTCTGGAATAAAAGAGTATGGGTTGTCCCTTAATTCACC
ATCCCTTCCTATACCCCATGGGTTGACTAAAACTTGGGCCCCATTTGGCC
CCTTGAACCCGGCACCTTCTGAATCTGCTGGGGCTTTACCGGGAAGTAAA
AGAGGAACTGCCGGGTGCAACCGGAAGGTTTCTTTGAATACTGCTTGTAA
ATAAGGCAAGCGGCTGATGTCTGATTCCCCAATTGGATTGCATTTCCCAA
TCGGTTGTTCCAACTCTAATCGGACTTTTGATAAAATATCTGGGTTGCGA
AGTAGTTCTGTCATTGCCCATTCC
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