CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 62/115 (53.91%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG------GGADAGAS 584
            ++I++MVQEAE+YK+ED+ ++ +V AKNALE+Y YN++ T++DEK+  K+   DK KI D  +E I WLD NQ+AE DE+E K KELE +CNPII+K+YQG      GG  +GAS
Sbjct:  516 DDIDRMVQEAERYKSEDEANRDRVAAKNALESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGSGGGGSGAS 630          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 581
            +I++MV EAEKYK+ED+ +K ++EAKN LENY+YN+RNT+ DEK+  ++P  DKK IED + E I WLD NQ AE +E+E K KELE I NPI+ KMY   GA  G
Sbjct:  517 DIDRMVSEAEKYKSEDEANKIRIEAKNGLENYSYNLRNTLNDEKLKDQIPEDDKKAIEDKVTETINWLDANQSAEKEEYEGKQKELEGIANPILQKMYAAAGAAGG 622          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.491e-30
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            EEIE+MV +AEKYKAED+  ++K+ AKNALE+YA+NM++ + DE +  K+  ADKKKI +   EA+ WL+ NQLAE DEF+ K +ELE +CNPII K+YQGG
Sbjct:  515 EEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSAVSDEGLKGKISDADKKKILNKCNEALSWLEANQLAEKDEFDHKRRELEQVCNPIITKLYQGG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            ++IE+MVQEAEKYK+ED+ +  ++EAKN LENYAYN+RNT+ DEK+  K+  +DKK I+D + + I WLD NQ AE +EFE K KELE I NPI+ KMY   G   G
Sbjct:  516 DDIERMVQEAEKYKSEDEANNVRIEAKNGLENYAYNLRNTLNDEKLQGKIDESDKKVIDDKVTDIINWLDHNQSAEKEEFEAKQKELEGIANPIMQKMYAAAGGAPG 622          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP72_HUMAN6.693e-3153.91Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]
HSP70_BRELC6.693e-3157.55Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HS71L_PIG1.491e-3058.82Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HSP70_ACHKL1.947e-3057.01Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HSP7C_SAGOE2.544e-3057.01Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT2.544e-3057.01Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB2.544e-3057.01Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE2.544e-3057.01Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_HUMAN2.544e-3057.01Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE2.544e-3057.01Heat shock cognate 71 kDa protein OS=Equus caballu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
back to top