CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYK EDD  + KV +KN+LE+YA+NM++T++DEK+  K+   DK KI +   E I WLD NQ AE +E+E   KELE +CNPII K+YQG G   G
Sbjct:  513 EDIERMVQEAEKYKCEDDVQRDKVSSKNSLESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQGAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 56/107 (52.34%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            EEIE+MV +AEK+K ED++ + +V AKN LE+YA++M++T++DEK+  K+  +D+++I +  EE ++WLDGNQ AE +E+E + KELE +CNPIIAKMYQ  G   G
Sbjct:  515 EEIERMVNDAEKFKQEDEKQRDRVAAKNGLESYAFSMKSTVEDEKVKEKIGESDRRRIMEKCEETVKWLDGNQQAEKEEYEHRQKELESVCNPIIAKMYQEAGGVGG 621          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            EEIE+MV +AEKYKAED+  ++K+ AKNALE+YA+NM++ + DE +  K+  +DKKKI     E + WL+ NQLAE DEF+ K KELE +CNPII K+YQGG
Sbjct:  515 EEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSAVSDEGLQGKISESDKKKILSKCNEVLLWLEANQLAEKDEFDHKRKELEQVCNPIITKLYQGG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.262e-29
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            EEIE+MVQEAE+YKAED+  ++K+ AKNALE+YA+NM++ + DE +  K+  +DKKKI D   E + WL+ NQLAE +EF+ K KELE +CNPII K+YQ G
Sbjct:  515 EEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCSEVLSWLEANQLAEKEEFDHKRKELENMCNPIITKLYQSG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.649e-29
Identity = 60/110 (54.55%), Postives = 84/110 (76.36%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ-GGGADAGAS 584
            ++IE+MV EAEKYKA+D+  K ++ AKN LE+YA+N++ TI+DEK+  K+   DKKKIED  +E ++WLD NQ AE +EFE + K+LE + NPII+K+YQ  GGA  GA+
Sbjct:  514 DDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAA 623          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.649e-29
Identity = 54/112 (48.21%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDE 584
            E+IE+MVQ+A+KYKAEDD  ++K+ AKN+LE+YA+NM+++++D+ +  K+   DKKK+ D  ++ I WL+ NQL + +E+E ++KELE +C PII K+YQ GG   G   D+
Sbjct:  515 EDIERMVQDADKYKAEDDAQREKIAAKNSLESYAFNMKSSVEDDNMKGKISQEDKKKVVDRCDQTISWLENNQLGDKEEYEHQLKELEKVCQPIITKLYQQGGMPTGCCGDQ 626          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.153e-29
Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGA 584
            EEI++MV EAEKYKAED+    +++AKN LE+YAY++RN++ D  +  K+  +DK+ I+ A++E I+WLD N  A  DE+EDK KELE + NPI+AK+YQ GGA  GA
Sbjct:  511 EEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQAGGAPGGA 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.153e-29
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            EEIE+MV +AEKYKAED+  ++K+ AKNALE+YA+NM++ + DE +  K+  +DK KI D   E + WL+ NQLAE DEF+ K KELE +CNPII K+YQGG
Sbjct:  515 EEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLYQGG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 2.812e-29
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  273 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGA 584
            EEIE+MVQEAE+YKAED+  + +V AKNALE+YA+NM++ ++DE +  KL  ADKKK+ D  +E I WLD N LA+ +EF  K +ELE +C+PII+ +YQG GA
Sbjct:  513 EEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLYQGAGA 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.812e-29
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  273 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGA 584
            EEIE+MVQEAE+YKAED+  + +V AKNALE+YA+NM++ ++DE +  KL  ADKKK+ D  +E I WLD N LA+ +EF  K +ELE +C+PII+ +YQG GA
Sbjct:  513 EEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLYQGAGA 616          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP70_ONCMY9.665e-3056.07Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP70_ECHGR9.665e-3052.34Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HS71L_BOVIN9.665e-3057.84Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HS71L_RAT1.262e-2957.84Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HSP7A_CAEEL1.649e-2954.55Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP70_ONCTS1.649e-2948.21Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HSP71_SCHPO2.153e-2953.70Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HS71L_HUMAN2.153e-2957.84Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HS71B_MOUSE2.812e-2956.73Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE2.812e-2956.73Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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